View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_73 (Length: 216)
Name: NF0538_low_73
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 6270725 - 6270571
Alignment:
| Q |
50 |
aaatccaaattccccaaactaccctcatcttcctcactagacctcacagcttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaa |
149 |
Q |
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| T |
6270725 |
aaatccaaattccccaaactaccctcatcttcctcactagacctcacagctccctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaa |
6270626 |
T |
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| Q |
150 |
accgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctc |
204 |
Q |
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| T |
6270625 |
accgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctc |
6270571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 6261660 - 6261600
Alignment:
| Q |
88 |
agacctcacagcttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaa |
148 |
Q |
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||||||||||||||||| |||||||| |||| || ||||||||||||||| | |||||| |
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| T |
6261660 |
agacctcacagcttcctgcacccaccctccacctcccacgccaatcttcatctcaccaaaa |
6261600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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