View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0538_low_8 (Length: 540)

Name: NF0538_low_8
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0538_low_8
NF0538_low_8
[»] chr3 (2 HSPs)
chr3 (30-531)||(10945293-10945795)
chr3 (260-343)||(51882521-51882604)
[»] chr1 (2 HSPs)
chr1 (385-530)||(24307294-24307439)
chr1 (312-372)||(21355033-21355093)
[»] scaffold0196 (1 HSPs)
scaffold0196 (263-372)||(31613-31722)
[»] chr4 (2 HSPs)
chr4 (263-372)||(10988295-10988404)
chr4 (90-134)||(45038168-45038212)
[»] chr7 (1 HSPs)
chr7 (453-526)||(21909040-21909113)
[»] chr8 (2 HSPs)
chr8 (262-354)||(21407641-21407733)
chr8 (262-354)||(21802133-21802225)
[»] scaffold0001 (1 HSPs)
scaffold0001 (263-354)||(198795-198886)
[»] chr5 (1 HSPs)
chr5 (91-136)||(25456589-25456634)


Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 30 - 531
Target Start/End: Original strand, 10945293 - 10945795
Alignment:
Q  30 gttactaaaactatccatcaaaa-aattttgttaatttgtttaaaagtttaatccttctaaattacaaacctcaaacctaaagaaccctttgtgtaattt 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945293 gttactaaaactatccatcaaaaaaattttgttaatttgtttaaaagtttaatccttctaaattacaaacctcaaacctaaagaaccctttgtgtaattt 10945392  T
Q  129 agccaaaataaaatgtaaaagaaatatagtgaagcagtttggatatagatataaattataggatagagtaaaataaactaattttaaacatatctaaagt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945393 agccaaaataaaatgtaaaagaaatatagtgaagcagtttggacatagatataaattataggatagagtaaaataaactaattttaaacatatctaaagt 10945492  T
Q  229 atgataaagggttctgtttttcaggaggagcttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10945493 atgataaagggttctgtttttcaggaggagcttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagta 10945592  T
Q  329 actcttccagtgcggttcatgctttcaacaatccctctcttatttacattcatttacggaaccattggcataactgcacacaccgtggtctgatggttat 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10945593 actcttccagtgcggttcatgctttcaacaatccctctcttatttacattcatttacggaaccgttggcataactgcacacaccgtggtctgatggttat 10945692  T
Q  429 ttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgccttct 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945693 ttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgccttct 10945792  T
Q  529 ttt 531  Q
    |||    
T  10945793 ttt 10945795  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 51882521 - 51882604
Alignment:
Q  260 ttttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcgg 343  Q
    ||||||||||||||||||||||||||||||| ||| | || |||||| | || || | ||||||||| || || || |||||||    
T  51882521 ttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctctagtgcgg 51882604  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 530
Target Start/End: Complemental strand, 24307439 - 24307294
Alignment:
Q  385 cggaaccattggcataactgcacacaccgtggtctgatggttatttgttcacatattttctgggaagaaaacggttgtgttgacaagttcgcaactttgg 484  Q
    |||||||||||||| || ||||| ||||||||||||||| |||||||||| ||||| ||  |||||| |||| ||||||  ||   | | ||||||||||    
T  24307439 cggaaccattggcacaattgcactcaccgtggtctgatgattatttgttcgcatatctttcgggaaggaaactgttgtgcggatgggcttgcaactttgg 24307340  T
Q  485 ggcatgcgttgatagacactacttggtacatcattttgccttcttt 530  Q
    ||||||||  || |||||||||||||| |  |||||| ||||||||    
T  24307339 ggcatgcgcagacagacactacttggttcgccattttaccttcttt 24307294  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 21355033 - 21355093
Alignment:
Q  312 tttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatccctctcttatt 372  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||| | || || |||||||||    
T  21355033 tttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttatt 21355093  T

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Target: scaffold0196 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 31722 - 31613
Alignment:
Q  263 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatcc 362  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| ||||||||||| |||||| | || ||    
T  31722 tgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggttcaagctttccataaacc 31623  T
Q  363 ctctcttatt 372  Q
     |||||||||    
T  31622 atctcttatt 31613  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 10988404 - 10988295
Alignment:
Q  263 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttcaacaatcc 362  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| ||||||||||| |||||| | || ||    
T  10988404 tgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggttcaagctttccataaacc 10988305  T
Q  363 ctctcttatt 372  Q
     |||||||||    
T  10988304 atctcttatt 10988295  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 45038212 - 45038168
Alignment:
Q  90 attacaaacctcaaacctaaagaaccctttgtgtaatttagccaa 134  Q
    |||||||||||||||| |||||||||||   ||||||||||||||    
T  45038212 attacaaacctcaaacttaaagaaccctggatgtaatttagccaa 45038168  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 21909113 - 21909040
Alignment:
Q  453 aaacggttgtgttgacaagttcgcaactttggggcatgcgttgatagacactacttggtacatcattttgcctt 526  Q
    |||| |||||| |||| || | |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||    
T  21909113 aaactgttgtgctgactagctagcaactttggggtatgcgctgacagacactacttggtacaccattttgcctt 21909040  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 354
Target Start/End: Complemental strand, 21407733 - 21407641
Alignment:
Q  262 ttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 354  Q
    ||||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  21407733 ttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 21407641  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 354
Target Start/End: Complemental strand, 21802225 - 21802133
Alignment:
Q  262 ttgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 354  Q
    ||||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  21802225 ttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 21802133  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 198886 - 198795
Alignment:
Q  263 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtgactcttccagtgcggttcatgctttc 354  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  198886 tgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttc 198795  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 25456589 - 25456634
Alignment:
Q  91 ttacaaacctcaaacctaaagaaccctttgtgtaatttagccaaaa 136  Q
    ||||||||||||||| |||||||||| | | |||||||||||||||    
T  25456589 ttacaaacctcaaacttaaagaacccatggagtaatttagccaaaa 25456634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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