View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0538_low_9 (Length: 529)
Name: NF0538_low_9
Description: NF0538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0538_low_9 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 148 - 432
Target Start/End: Complemental strand, 50428206 - 50427922
Alignment:
| Q |
148 |
aacctgtgccagaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
247 |
Q |
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| T |
50428206 |
aacctgtgccagaaacaatcccaaattctctttcctttgttgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
50428107 |
T |
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| Q |
248 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
347 |
Q |
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| T |
50428106 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
50428007 |
T |
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| Q |
348 |
tctgttactggatcatcaattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactg |
432 |
Q |
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| T |
50428006 |
tctgttactggatcatcgattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactg |
50427922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 394
Target Start/End: Complemental strand, 50423033 - 50422787
Alignment:
| Q |
148 |
aacctgtgccagaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
247 |
Q |
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| T |
50423033 |
aacctgtgcctgaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaa |
50422934 |
T |
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| Q |
248 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
347 |
Q |
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| T |
50422933 |
tatcaccgagaaaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccc |
50422834 |
T |
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| Q |
348 |
tctgttactggatcatcaattattgccacggtgccgaagtgttggat |
394 |
Q |
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| T |
50422833 |
tcggttactggatcgtcaactatagctacggtgccaaagtgtaggat |
50422787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 7247384 - 7247255
Alignment:
| Q |
7 |
acagcaaaaccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaaggg |
106 |
Q |
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| T |
7247384 |
acagcaaaaccaaaggtgcatggactaacatgcatttgcatttaattttttctttgtacattagtttatgaatttgtgtaaaagatgtcagagacaaggg |
7247285 |
T |
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| Q |
107 |
cagcagcagcaacaacaaaggcaggtgcag |
136 |
Q |
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| T |
7247284 |
cagcagcagcaacaacaaaggcaggtgcag |
7247255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 25321379 - 25321474
Alignment:
| Q |
16 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagca |
111 |
Q |
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| T |
25321379 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgtacatttattagtgaatttttgtaaaagatgttagagacaaaggcagca |
25321474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 18505 - 18409
Alignment:
| Q |
16 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgt-aaaagatgtcagagacaagggcagca |
111 |
Q |
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| T |
18505 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgtacatttccttgtgaatttttgtaaaaagatgtcagtgacaaaggcagca |
18409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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