View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_high_3 (Length: 446)
Name: NF0539_high_3
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 32272228 - 32271812
Alignment:
| Q |
1 |
tttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272228 |
tttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgcc |
32272129 |
T |
|
| Q |
101 |
gagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcact |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272128 |
gagaatcaacggttggaacagcgaccacctaccgatctacgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcact |
32272029 |
T |
|
| Q |
201 |
gaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272028 |
gaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaa |
32271929 |
T |
|
| Q |
301 |
catactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32271928 |
catactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaat |
32271829 |
T |
|
| Q |
401 |
tgagaggattctgactc |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
32271828 |
tgagaggattctgactc |
32271812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 412
Target Start/End: Complemental strand, 45416130 - 45415908
Alignment:
| Q |
190 |
tcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagc |
289 |
Q |
| |
|
||||||||||||| | || ||||||||| ||||| |||||| ||||||| ||| ||||||||||||||||| ||| |||||||| |||||||| |
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| T |
45416130 |
tcttcagcactgatatagaaaaacatgtttatgaagcggatataatctttgttaatgtcaacacaccaacaaaaacaagtggccttggagctggcaaagc |
45416031 |
T |
|
| Q |
290 |
ggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaaca |
389 |
Q |
| |
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||| |||||||| || ||||| ||| | || | ||||| ||||||||||| | ||| |||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
45416030 |
ggcggatttaacttattgggaaagtgcagcgagaatgatagccgatgtttcaagatcaaacaaaattgtcgttgagaaatcaactgttccagttagaaca |
45415931 |
T |
|
| Q |
390 |
gctgaagcaattgagaggattct |
412 |
Q |
| |
|
||||||| |||||| | |||||| |
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|
| T |
45415930 |
gctgaagtaattgaaaagattct |
45415908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 45416311 - 45416267
Alignment:
| Q |
9 |
attggagctggatatgttggtggtcccacaatggctgtgattgcc |
53 |
Q |
| |
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||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
45416311 |
attggagctggatatgtagggggtccaacaatggctgttattgcc |
45416267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 19327397 - 19326981
Alignment:
| Q |
1 |
tttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgcc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||| | || || ||||| | |||| |
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| T |
19327397 |
tttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattgaggtagctgttgttgatatcgccacgcc |
19327298 |
T |
|
| Q |
101 |
gagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcact |
200 |
Q |
| |
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||||||| | ||||||||| |||||| | || || |||||||| |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
19327297 |
tcgaatcaatgcttggaacagtgaccacttgcctatatatgagcctggtcttgatgatgtggtgaagaagtgcagaggaaagaaccttttcttcagcact |
19327198 |
T |
|
| Q |
201 |
gaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaa |
300 |
Q |
| |
|
|| || |||||||||||||| || ||| | || || ||||| || |||||||| || || || ||||| ||||||||||| |||||||| |||||| | | |
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| T |
19327197 |
gatgttgagaaacatgttgccgaggctaacatcgtgtttgtttcggtgaacactccgaccaagactcagggtcttggagctggcaaagcagctgatctca |
19327098 |
T |
|
| Q |
301 |
catactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaat |
400 |
Q |
| |
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| |||||||||||| | ||| | |||||||| |||||||| ||||||||||||||||| || || ||||| ||||| || |||| ||| ||||| ||||| |
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| T |
19327097 |
cttactgggagagtgctgctagaatgattgctgatgtttcaaaatcggacaaaattgtcgtcgagaaatcgactgttccggttaaaactgctgaggcaat |
19326998 |
T |
|
| Q |
401 |
tgagaggattctgactc |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
19326997 |
tgagaggattctgactc |
19326981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 405
Target Start/End: Complemental strand, 3665034 - 3664860
Alignment:
| Q |
231 |
atagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattg |
330 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||||| ||||| || ||||||||||| || ||||| || || |||||||| | ||||| ||||||| |
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|
| T |
3665034 |
atagtgtttgtctctgtgaacaccccgactaaaactcagggtctcggtgccggcaaagcagcagatttgacgtattgggagagcgcagctcgtatgattg |
3664935 |
T |
|
| Q |
331 |
ccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaattgaga |
405 |
Q |
| |
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||||||| || || || |||||||| || || || ||||||||||| ||||| | ||| ||||| |||||||||| |
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| T |
3664934 |
ccgatgtctcaaagtctgacaaaatcgttgtcgagaaatcaactgtccctgtcaaaactgctgaggcaattgaga |
3664860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 358
Target Start/End: Complemental strand, 10779356 - 10779182
Alignment:
| Q |
184 |
accttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccgg |
283 |
Q |
| |
|
||||||||||||||||||| || || |||||||| |||||| | || || ||||||| ||| |||| | || |||||||| |||||||||| | |
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|
| T |
10779356 |
accttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaacatgctgactaaaactcacagtcttggagctgt |
10779257 |
T |
|
| Q |
284 |
caaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgt |
358 |
Q |
| |
|
|| ||| || ||||||||||| || |||||| | ||| ||||||| ||| ||||||||||||| || |||||||| |
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| T |
10779256 |
cacagccgcagatttaacatattgcgagagtgcggcttggatgatcgccaatgtttctaaatctgaaaaaattgt |
10779182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 4835726 - 4835643
Alignment:
| Q |
182 |
gaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaact |
266 |
Q |
| |
|
||||||||||||||||| ||| || | ||||||||| | | ||||| ||||| ||||||||||| || ||||||||||||||| |
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|
| T |
4835726 |
gaaccttttcttcagcattgatgtcaaaaaacatgttataca-gctgacatagtgtttgtatctgtcaatacaccaacaaaaact |
4835643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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