View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0539_high_6 (Length: 371)

Name: NF0539_high_6
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0539_high_6
NF0539_high_6
[»] chr5 (16 HSPs)
chr5 (72-366)||(10275780-10276082)
chr5 (72-366)||(7102473-7102787)
chr5 (72-366)||(16795413-16795727)
chr5 (72-366)||(12020033-12020347)
chr5 (72-366)||(30696540-30696854)
chr5 (72-366)||(40370346-40370660)
chr5 (203-366)||(37678923-37679094)
chr5 (72-195)||(37659971-37660094)
chr5 (72-195)||(15065599-15065722)
chr5 (24-70)||(30695641-30695687)
chr5 (17-70)||(7103640-7103693)
chr5 (17-70)||(16794507-16794560)
chr5 (22-70)||(10274880-10274928)
chr5 (202-279)||(15065495-15065580)
chr5 (17-70)||(12019127-12019180)
chr5 (17-70)||(37659065-37659118)
[»] scaffold0044 (2 HSPs)
scaffold0044 (72-366)||(47964-48278)
scaffold0044 (17-70)||(49131-49184)
[»] chr6 (9 HSPs)
chr6 (72-366)||(8318603-8318917)
chr6 (72-366)||(27570831-27571145)
chr6 (72-363)||(17160840-17161150)
chr6 (193-366)||(17889729-17889910)
chr6 (11-70)||(21416872-21416931)
chr6 (17-70)||(8319770-8319823)
chr6 (11-58)||(17159926-17159973)
chr6 (24-70)||(27574471-27574517)
chr6 (21-70)||(14531571-14531620)
[»] chr1 (3 HSPs)
chr1 (72-366)||(26312757-26313071)
chr1 (72-366)||(39795139-39795453)
chr1 (17-58)||(39794233-39794274)
[»] chr8 (13 HSPs)
chr8 (72-369)||(1288071-1288385)
chr8 (72-366)||(200783-201097)
chr8 (72-366)||(315620-315934)
chr8 (72-366)||(30408902-30409216)
chr8 (72-366)||(43810582-43810896)
chr8 (72-364)||(41946560-41946872)
chr8 (72-364)||(28647655-28647967)
chr8 (17-70)||(30410069-30410122)
chr8 (17-70)||(201950-202003)
chr8 (17-70)||(316787-316840)
chr8 (17-70)||(43811749-43811802)
chr8 (72-164)||(17784930-17785022)
chr8 (23-70)||(28644924-28644971)
[»] chr2 (9 HSPs)
chr2 (74-366)||(13269633-13269939)
chr2 (72-366)||(8052136-8052450)
chr2 (72-366)||(36671795-36672109)
chr2 (179-364)||(35953533-35953726)
chr2 (23-72)||(29768876-29768925)
chr2 (23-70)||(17255629-17255676)
chr2 (17-70)||(8051230-8051283)
chr2 (17-70)||(36670889-36670942)
chr2 (22-70)||(13270794-13270842)
[»] chr4 (7 HSPs)
chr4 (72-369)||(43682288-43682592)
chr4 (72-366)||(44148302-44148616)
chr4 (72-366)||(31355923-31356233)
chr4 (72-366)||(27187383-27187694)
chr4 (24-67)||(31355024-31355067)
chr4 (25-70)||(27186485-27186530)
chr4 (25-70)||(43683445-43683490)
[»] chr7 (5 HSPs)
chr7 (72-366)||(7943182-7943496)
chr7 (72-366)||(27758141-27758455)
chr7 (17-70)||(7944349-7944402)
chr7 (17-70)||(27757235-27757288)
chr7 (25-58)||(8675293-8675326)
[»] chr3 (7 HSPs)
chr3 (72-366)||(54170443-54170757)
chr3 (72-366)||(21848367-21848681)
chr3 (72-366)||(9698825-9699137)
chr3 (72-291)||(43548958-43549193)
chr3 (24-70)||(21847473-21847519)
chr3 (25-70)||(9697927-9697972)
chr3 (17-70)||(54171610-54171663)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 10275780 - 10276082
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| |||||||||||   ||| |  ||||||||||  |||||||| ||||||  ||||||||||||| |||||    
T  10275780 taagaagaagattcagtgtttcaaatgtgagaaatttggacacgatgcttcagaatgttggtatggtaaaggaaaacaatcaaagaatgatgaagaggaa 10275879  T
Q  172 gctaaggttgcacaagatgattcattattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactggttgttata 263  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||| |||| ||||||||| ||        |||||||||||||||||||||||| ||    
T  10275880 gctaaagttgcactagatgattcattattgatgatggttacaacaaccagtactgagagctgcaattcagaaagttggttcttagatactggttgttcta 10275979  T
Q  264 atcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcagaaggaat 363  Q
    |||| |||||   ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  10275980 atcacatgacaggaaataagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaat 10276079  T
Q  364 ggg 366  Q
    |||    
T  10276080 ggg 10276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 7102787 - 7102473
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  7102787 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 7102688  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  7102687 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 7102588  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  7102587 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 7102488  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  7102487 tgcagaaggaatggg 7102473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 16795413 - 16795727
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  16795413 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 16795512  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  16795513 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 16795612  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  16795613 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 16795712  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  16795713 tgcagaaggaatggg 16795727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 12020033 - 12020347
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  12020033 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 12020132  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  12020133 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 12020232  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||  |    
T  12020233 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaaacttgcagatcatagagtcttaat 12020332  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  12020333 tgcagaaggaatggg 12020347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 30696540 - 30696854
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  30696540 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaataatgatgaagaggaa 30696639  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||| ||||| ||||||||| ||        |||||||||||||||    
T  30696640 gccaaaattgcacaagatgattcagattctgagtcattattcatgatggttacaacaattagtaatgagagctgcaattcagaaagttggttcttagata 30696739  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||  | |||||||||||||  || ||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||| |||||||| || ||    
T  30696740 ctggttaatctaatcatatgactggaaccaagacatggttaagagaagtggattttggaagaaacacaaaggtgaaacttgcagatcatagagtattagt 30696839  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  30696840 tgcagaaggaatggg 30696854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 40370660 - 40370346
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||| || |||  ||||||||||||| | |||    
T  40370660 taagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcctttgaatgttggtctagtaaaggaaagcaatcaaagaatgatgaagaagaa 40370561  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagct--------gtaagttggttcttagata 251  Q
    || ||  |||| ||||||||||||            |||||  ||||||||||||||||||||| ||||||||        | |||||||||||||||||    
T  40370560 gccaaaattgctcaagatgattcagattctgagtcattattcatgatggttacaacaactagtaatgagagctccaattcagaaagttggttcttagata 40370461  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||||||||||  ||   |||||| ||||||||||||||||  | ||||||| ||||||||||| |||| ||| ||||||||||| ||    
T  40370460 ctggttgttctaatcatatgactggaactcagacattgttaagagaagtggattctagaagaaacacaaaggtgaaacttgcagatcatagagtcttagt 40370361  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  40370360 tgcagaaggaatggg 40370346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 37678923 - 37679094
Alignment:
Q  203 tgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactggttgttataatcatatgactaaaaacaagacatggttaag 294  Q
    ||||||||||||||||||||| ||||||||| ||        |||||||||||||||||||||||| |||||| |||||   ||||||||||||||||||    
T  37678923 tgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacaggaaacaagacatggttaag 37679022  T
Q  295 agaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcagaaggaatggg 366  Q
    ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||  ||||||||||||||||    
T  37679023 agaagtggatcctggaagaaatacaaaggtgaaacttgcagatcatagagtcttaattgcagaaggaatggg 37679094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 37659971 - 37660094
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  37659971 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 37660070  T
Q  172 gctaaggttgcacaagatgattca 195  Q
    || ||  |||||||||||||||||    
T  37660071 gccaaaattgcacaagatgattca 37660094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 15065722 - 15065599
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    ||||||||||||||| ||||| ||||||||||| ||||  || ||||| |  ||||||||||| |||||||| || |||| ||||||||||||  |  ||    
T  15065722 taagaagaagattcaatgttttaaatgtgaaaattttgatcactttgcttccgaatgttggtctggtaaaggaaagcaagcaaagaatgatgaggaacaa 15065623  T
Q  172 gctaaggttgcacaagatgattca 195  Q
    |||||| |||| ||||| ||||||    
T  15065622 gctaagattgctcaagaggattca 15065599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 30695641 - 30695687
Alignment:
Q  24 ctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||    
T  30695641 ctgcgctatcaaattggcatcaagagcctttggtttcattctaaggg 30695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 7103693 - 7103640
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  7103693 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 7103640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 16794507 - 16794560
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  16794507 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 16794560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 10274880 - 10274928
Alignment:
Q  22 tgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||||||||||||| |||||||||||| ||||| | |||||||||    
T  10274880 tgctgcgctaacaaattgacatcaagagcctttggtttcgttctaaggg 10274928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 15065580 - 15065495
Alignment:
Q  202 ttgatggttacaacaactagtattgagagctgtaagt--------tggttcttagatactggttgttataatcatatgactaaaaa 279  Q
    |||||||||||||||||||||| ||||||||| || |        |||||||||| ||||||||||| ||||||||||||| ||||    
T  15065580 ttgatggttacaacaactagtaatgagagctgcaattcagaaagatggttcttagttactggttgttctaatcatatgactgaaaa 15065495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12019127 - 12019180
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||| ||||||| ||||| | |||||||||    
T  12019127 tgattttctgcgctatcaaattggcatctagagcctttggtttcgttctaaggg 12019180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 37659065 - 37659118
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||| ||||||| ||||| | |||||||||    
T  37659065 tgattttctgcgctatcaaattggcatctagagcctttggtttcgttctaaggg 37659118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 48278 - 47964
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  48278 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 48179  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  48178 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 48079  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  48078 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 47979  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  47978 tgcagaaggaatggg 47964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 49184 - 49131
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||| ||||||| ||||| | |||||||||    
T  49184 tgattttctgcgctatcaaattggcatctagagcctttggtttcgttctaaggg 49131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 8318917 - 8318603
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  8318917 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 8318818  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  8318817 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 8318718  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  8318717 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 8318618  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  8318617 tgcagaaggaatggg 8318603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 27571145 - 27570831
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||| |||||||| || |||  ||||||||||||| |||||    
T  27571145 taagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcatctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaa 27571046  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||| ||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  27571045 gccaaaattgctcaagatgattcagattctgagtcattattcatgatggttacaacaactagtaatgagagctgcaattcaaaaagttggttcttagata 27570946  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||||||||||  || |||||||||||||||||||||||||  ||||||||| ||||||||||| |||| |||  |||||||||| ||    
T  27570945 ctggttgttctaatcatatgactggaaccaagacatggttaagagaagtggattctggaagaaacacaaaggtgaaacttgcagataatagagtcttagt 27570846  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  27570845 tgcagaaggaatggg 27570831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 363
Target Start/End: Original strand, 17160840 - 17161150
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  17160840 taagaagaagattcagtgtttcaaatgtaagaaatttggacaatttgccactgaatgttggtctggtaaagggaaacaagaaaagattgatgaagaggaa 17160939  T
Q  172 gctaaggttgcacaaga------------tgattcattattgttgatggttacaacaactagtattgagagctg--------taagttggttcttagata 251  Q
    ||||||  |||||||||            ||| ||||||||  ||||||||||||||||||||| ||| |||||         ||||||||||||| |||    
T  17160940 gctaagagtgcacaagatggttcagattctgagtcattattcatgatggttacaacaactagtaatgacagctgcaattcaaaaagttggttcttacata 17161039  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||| ||| |||||||||||||  || ||| | |||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||    
T  17161040 ctggtagttctaatcatatgactggaaccaataaatggttaaga-aagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttagt 17161138  T
Q  352 tgcagaaggaat 363  Q
    ||||||||||||    
T  17161139 tgcagaaggaat 17161150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 193 - 366
Target Start/End: Complemental strand, 17889910 - 17889729
Alignment:
Q  193 tcattattgttgatggttacaacaactagtattgagagctgta--------agttggttcttagatactggttgttataatcatatgactaaaaacaaga 284  Q
    |||||||| |||||||| ||||||||||||| ||||||||| |        ||||||||||||||||||||||||| ||||||||||| |  || |||||    
T  17889910 tcattattcttgatggtcacaacaactagtaatgagagctgcatttcagaaagttggttcttagatactggttgttctaatcatatgattggaatcaaga 17889811  T
Q  285 catggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcagaaggaatggg 366  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||| || | | |||||| |||| |||||||||||||||||    
T  17889810 catggttaagagaagtgtatcctggaagaaacacaaaggtgaagcgtgcaaatcatagattcttagttgcagaaggaatggg 17889729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 21416931 - 21416872
Alignment:
Q  11 aagcattgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||    
T  21416931 aagcattgatttgttgcgctaacaaattggcatcaagagcctttggtttcgttctaaggg 21416872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 8319823 - 8319770
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  8319823 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 8319770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 17159926 - 17159973
Alignment:
Q  11 aagcattgatttgctgcgctaacaaattggcatcaagagcctgtggtt 58  Q
    |||| |||||||| |||||||||||||||| |||||||||| ||||||    
T  17159926 aagctttgatttgttgcgctaacaaattgggatcaagagcccgtggtt 17159973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 27574517 - 27574471
Alignment:
Q  24 ctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  27574517 ctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 27574471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 14531620 - 14531571
Alignment:
Q  21 ttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    ||||||||||| | | |||||||||||||||||||||| | |||||||||    
T  14531620 ttgctgcgctatcgatttggcatcaagagcctgtggtttcgttctaaggg 14531571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 26312757 - 26313071
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  26312757 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 26312856  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  26312857 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 26312956  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  26312957 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 26313056  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  26313057 tgcagaaggaatggg 26313071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 39795139 - 39795453
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  39795139 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 39795238  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  39795239 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 39795338  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  39795339 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 39795438  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  39795439 tgcagaaggaatggg 39795453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39794233 - 39794274
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggtt 58  Q
    |||||| |||||||| |||||||||||||||||||| |||||    
T  39794233 tgattttctgcgctatcaaattggcatcaagagcctttggtt 39794274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 72 - 369
Target Start/End: Original strand, 1288071 - 1288385
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    ||||||||||||| |||||||||||||||||||||||||||| | ||| |  ||||||||||  |||||||| ||||||  |||||||||||||||||||    
T  1288071 taagaagaagatttagtgtttcaaatgtgaaaaatttggacactatgcttcagaatgttggtttggtaaaggaaaacaatcaaagaatgatgaaaaggaa 1288170  T
Q  172 gctaaggttgcacaagatgattca---------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactg 254  Q
    ||||| ||||||||||||||||||         |||||| | |||||||||||||| |||| ||||||||| ||        ||||||||||||||||||    
T  1288171 gctaaagttgcacaagatgattcaaataattcattattgattatggttacaacaaccagtactgagagctgcaattcagaaagttggttcttagatactg 1288270  T
Q  255 gttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgc 354  Q
    |||||| | |||| |||||   |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| | ||||||||||    
T  1288271 gttgttctgatcacatgacaggaaacaagacatggtcaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatatactcttggttgc 1288370  T
Q  355 agaaggaatgggaaa 369  Q
    |||||||||||||||    
T  1288371 agaaggaatgggaaa 1288385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 201097 - 200783
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  201097 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 200998  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  200997 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 200898  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  200897 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 200798  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  200797 tgcagaaggaatggg 200783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 315934 - 315620
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  315934 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 315835  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  315834 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 315735  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  315734 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 315635  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  315634 tgcagaaggaatggg 315620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 30409216 - 30408902
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  30409216 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 30409117  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  30409116 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 30409017  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  30409016 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 30408917  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  30408916 tgcagaaggaatggg 30408902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 43810896 - 43810582
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  43810896 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 43810797  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  43810796 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 43810697  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43810696 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 43810597  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  43810596 tgcagaaggaatggg 43810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 72 - 364
Target Start/End: Original strand, 41946560 - 41946872
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||| || |||  ||||||||||||| |||||    
T  41946560 taagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaa 41946659  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  41946660 gccaaaattgcacaagatgattcagattctgagtcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 41946759  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
     |||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||| ||||||  |    
T  41946760 ttggttgttctaatcatatgactggaaccaagacatggttaagagaagtggatcttggaagaaacacaaaggtggagcttgcagatcataaagtcttaat 41946859  T
Q  352 tgcagaaggaatg 364  Q
    |||||||||||||    
T  41946860 tgcagaaggaatg 41946872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 72 - 364
Target Start/End: Original strand, 28647655 - 28647967
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||| |||||||| || |||  ||||||||||||| |||||    
T  28647655 taagaagaagattcagtgattcaaatgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaa 28647754  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagct--------gtaagttggttcttagata 251  Q
    || ||  |||| ||||||||||||            |||||  ||||||||||||||||||||| ||||||||        | |||||||||||||||||    
T  28647755 gccaaaattgcgcaagatgattcagattttgagtcattattcatgatggttacaacaactagtaatgagagctacaattcagaaagttggttcttagata 28647854  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||||||||||  || |||||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||  ||||||||||| ||    
T  28647855 ctggttgttctaatcatatgactggaaccaagacatggttaagagaagtggatcctggaagaaacacaaaggtgaaacttgcagttcatagagtcttagt 28647954  T
Q  352 tgcagaaggaatg 364  Q
    |||||||||||||    
T  28647955 tgcagaaggaatg 28647967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 30410122 - 30410069
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||    
T  30410122 tgattttctgcgctatcaaattggcatcaagagcctttggtttcattctaaggg 30410069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 202003 - 201950
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  202003 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 201950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 316840 - 316787
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  316840 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 316787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 43811802 - 43811749
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  43811802 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 43811749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 17785022 - 17784930
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatga 164  Q
    |||||||||||||| |||||| |||||||| || ||||| || ||||| | | |||| ||||| |||||||| || |||| |||||| |||||    
T  17785022 taagaagaagattcggtgttttaaatgtgagaattttggtcactttgcttctaaatgctggtctggtaaaggaaagcaagtaaagaaagatga 17784930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 28644924 - 28644971
Alignment:
Q  23 gctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    ||||||||| |||||||||||||||||||| ||||| | |||||||||    
T  28644924 gctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 28644971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 74 - 366
Target Start/End: Complemental strand, 13269939 - 13269633
Alignment:
Q  74 agaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaagc 173  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||| |||||||| ||||||  || |||||||||| |||||||    
T  13269939 agaagaagattcagtgtttcaaatgtgaaaaatttggacattatgcttcagaatgttggtctggtaaaggaaaacaatcaa-gaatgatgaagaggaagc 13269841  T
Q  174 taaggttgcacaagatgattca---------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactggt 256  Q
    ||| ||||||||||||||||||         |||||| |||||||||||||||| | || ||||||||| ||        ||||||||  ||||||||||    
T  13269840 taaagttgcacaagatgattcagatgattcattattgatgatggttacaacaaccaatactgagagctgcaattcaaaaagttggttc--agatactggt 13269743  T
Q  257 tgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcag 356  Q
    |||| |||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  13269742 tgttctaatcatatgataggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcag 13269643  T
Q  357 aaggaatggg 366  Q
    ||||||||||    
T  13269642 aaggaatggg 13269633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 8052136 - 8052450
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  8052136 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 8052235  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  8052236 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 8052335  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  8052336 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 8052435  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  8052436 tgcagaaggaatggg 8052450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 36671795 - 36672109
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  36671795 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 36671894  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  36671895 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 36671994  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  36671995 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 36672094  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  36672095 tgcagaaggaatggg 36672109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 35953726 - 35953533
Alignment:
Q  179 ttgcacaagatgattcattattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactggttgttataatcatat 270  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||| ||        |||||||||||||||||||||||| |||||| ||    
T  35953726 ttgcacaagatgattcattattgatgatggttacaacaaccagtactaagagctgcaattcaaaaagttggttcttagatactggttgttctaatcacat 35953627  T
Q  271 gactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcagaaggaatg 364  Q
    |||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35953626 gacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatg 35953533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 29768876 - 29768925
Alignment:
Q  23 gctgcgctaacaaattggcatcaagagcctgtggttccattctaagggtt 72  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||||||    
T  29768876 gctgcgctaacaaattggcatcaagagcttgtggtttcgttctaagggtt 29768925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17255629 - 17255676
Alignment:
Q  23 gctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||    
T  17255629 gctgcgctaacaaattggcatcaagagcctttggttctgttctaaggg 17255676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8051230 - 8051283
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  8051230 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 8051283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 36670889 - 36670942
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  36670889 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 36670942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 13270842 - 13270794
Alignment:
Q  22 tgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||||||||||||||||||| |||||| ||||| | |||||||||    
T  13270842 tgctgcgctaacaaattggcatcaggagcctttggtttcgttctaaggg 13270794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 369
Target Start/End: Complemental strand, 43682592 - 43682288
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    ||||||||||||| |||||||||||||||| ||||||||| | | ||| |  ||||||||||| |||||||| ||||||  || |||||||||| |||||    
T  43682592 taagaagaagattaagtgtttcaaatgtgagaaatttggatactatgcttcagaatgttggtctggtaaaggaaaacaatcaa-gaatgatgaagaggaa 43682494  T
Q  172 gctaaggttgcacaagatgattcattattgttgatggttacaacaactagtattgagagct--------gtaagttggttcttagatactggttgttata 263  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||| | ||||||        | |||||||||||||||||||||||||| ||    
T  43682493 gctaaagttgcacaagatgattcattattgatgatggttacaacaaccagtactaagagctgcaattcagaaagttggttcttagatactggttgttcta 43682394  T
Q  264 atcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgcagaaggaat 363  Q
    || | |||||   ||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  43682393 attacatgacaggaaacaagacatggttaagagaagcggatcctaaaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgaagaaggaat 43682294  T
Q  364 gggaaa 369  Q
    | ||||    
T  43682293 gagaaa 43682288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 44148302 - 44148616
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  44148302 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 44148401  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  44148402 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 44148501  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  44148502 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 44148601  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  44148602 tgcagaaggaatggg 44148616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 31355923 - 31356233
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||| |  ||||||||||  |||||||| ||||||  ||||||||||||| | |||    
T  31355923 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcttcagaatgttggtttggtaaaggaaaacaatcaaagaatgatgaagacgaa 31356022  T
Q  172 gctaaggttgcacaagatgattca---------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactg 254  Q
    ||||| ||||||||||||||||||         |||||| |||||||||||||||| |||| | |||| || ||        ||| ||||||||||||||    
T  31356023 gctaaagttgcacaagatgattcagatgattcattattgatgatggttacaacaac-agtactaagagatgcaattcagaaagttagttcttagatactg 31356121  T
Q  255 gttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgc 354  Q
    |||||| |||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  31356122 gttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgc 31356221  T
Q  355 agaaggaatggg 366  Q
    ||||||||||||    
T  31356222 agaaggaatggg 31356233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 27187383 - 27187694
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||| |  ||||||| | | |||||||| ||||||  ||||||||||||| |||||    
T  27187383 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcttcagaatgttagcctggtaaaggaaaacaatcaaagaatgatgaagaggaa 27187482  T
Q  172 gctaaggttgcacaagatgattca---------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatactg 254  Q
    ||||| |||||| |||||||||||         |||||| |||||||||||||||| |||| ||||||||| ||        ||||||||||||||| ||    
T  27187483 gctaaagttgcataagatgattcagatgattcattattgatgatggttacaacaaccagtactgagagctgcaattcagaaagttggttcttagatattg 27187582  T
Q  255 gttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttgc 354  Q
    |||||| |||||| |||||   ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||  | | |||||||||||||||||    
T  27187583 gttgttctaatcacatgacatgaaacaagacatggttaagagaagtggatcctggaagatatacaatggtgaagcttacaaatcatagagtcttggttgc 27187682  T
Q  355 agaaggaatggg 366  Q
    ||||| ||||||    
T  27187683 agaagaaatggg 27187694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 31355024 - 31355067
Alignment:
Q  24 ctgcgctaacaaattggcatcaagagcctgtggttccattctaa 67  Q
    |||||||| |||||||||||||||||||||||||| | ||||||    
T  31355024 ctgcgctatcaaattggcatcaagagcctgtggtttcgttctaa 31355067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 27186485 - 27186530
Alignment:
Q  25 tgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  27186485 tgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 27186530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 43683490 - 43683445
Alignment:
Q  25 tgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||||||||||||||||||||||| || || | |||||||||    
T  43683490 tgcgctaacaaattggcatcaagagcctttgatttcgttctaaggg 43683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 7943496 - 7943182
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  7943496 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 7943397  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  7943396 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 7943297  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  7943296 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 7943197  T
Q  352 tgcagaaggaatggg 366  Q
    |||| ||||||||||    
T  7943196 tgcataaggaatggg 7943182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 27758141 - 27758455
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||| ||| || |||  ||| ||||||||| |||||    
T  27758141 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtataggaaagcaatcaaaaaatgatgaagaggaa 27758240  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  27758241 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 27758340  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||  |    
T  27758341 ctggttgttctaatcacatgacaggaaataagacatggttaagagaagtggatcctggaagaaatacaaaggtgaaacttgcagatcatagagtcttaat 27758440  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  27758441 tgcagaaggaatggg 27758455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 7944402 - 7944349
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  7944402 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 7944349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27757235 - 27757288
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  27757235 tgattttctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 27757288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 8675293 - 8675326
Alignment:
Q  25 tgcgctaacaaattggcatcaagagcctgtggtt 58  Q
    |||||||||||||||||||||||||| |||||||    
T  8675293 tgcgctaacaaattggcatcaagagcatgtggtt 8675326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 54170757 - 54170443
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| || |||  ||| ||||||||| |||||    
T  54170757 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 54170658  T
Q  172 gctaaggttgcacaagatgattca------------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||||            |||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  54170657 gccaaaattgcacaagatgattcagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 54170558  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  54170557 ctggttgttctaatcacatgacaggaaacaagacatggttaagaaaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggt 54170458  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  54170457 tgcagaaggaatggg 54170443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 21848367 - 21848681
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||| || |||  ||| ||||||||| |||||    
T  21848367 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaa 21848466  T
Q  172 gctaaggttgcacaagatgatt------------cattattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagata 251  Q
    || ||  |||||||||||||||            |||||||  ||||||||||||||||||||| ||||||||| ||        |||||||||||||||    
T  21848467 gccaaaattgcacaagatgatttagattctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagata 21848566  T
Q  252 ctggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggt 351  Q
    ||||||||| |||||| |||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||  |    
T  21848567 ctggttgttctaatcacatgacaggaaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaaacttgcagatcatagagtcttaat 21848666  T
Q  352 tgcagaaggaatggg 366  Q
    |||||||||||||||    
T  21848667 tgcagaaggaatggg 21848681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 72 - 366
Target Start/End: Original strand, 9698825 - 9699137
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaa-caagaaaagaatgatgaaaagga 170  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||| |  ||||||| | | |||||| ||||| |||  ||||||||||||| ||||    
T  9698825 taagaagaagattcagtgtttcaaatgtgagaaatttggacactatgcttcagaatgttagcctggtaaaaggaaaacaatcaaagaatgatgaagagga 9698924  T
Q  171 agctaaggttgcacaagatgattca---------ttattgttgatggttacaacaactagtattgagagctgtaa--------gttggttcttagatact 253  Q
    |||||| |||||| |||||||||||         |||||| |||||||||||||||| |||| ||||||||| ||        ||||||||||||||| |    
T  9698925 agctaaagttgcataagatgattcagatgattcattattgatgatggttacaacaaccagtactgagagctgcaattcagaaagttggttcttagatatt 9699024  T
Q  254 ggttgttataatcatatgactaaaaacaagacatggttaagagaagtggatcttggaagaaatacaaaggtgaagcttgtagaccatagagtcttggttg 353  Q
    ||||||| |||||| |||||   ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||  | | ||||||||||||||||    
T  9699025 ggttgttctaatcacatgacatgaaacaagacatggttaagagaagtggatcctggaagatatacaatggtgaagcttacaaatcatagagtcttggttg 9699124  T
Q  354 cagaaggaatggg 366  Q
    |||||| ||||||    
T  9699125 cagaagaaatggg 9699137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 43548958 - 43549193
Alignment:
Q  72 taagaagaagattcagtgtttcaaatgtgaaaaatttggacattttgcctttgaatgttggtccggtaaagggaaacaagaaaagaatgatgaaaaggaa 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| |  |||||||||||  ||||||| ||||||  ||||||| ||||| |||||    
T  43548958 taagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcttcagaatgttggtctagtaaaggaaaacaatcaaagaataatgaagaggaa 43549057  T
Q  172 gctaaggttgcaca---------agatgattcattattgttgatggttacaacaactagtattgagagct--------gtaagttggttcttagatactg 254  Q
    ||||| ||||||||         |||||||||||||||| |||||||||||||||| |||| ||||||||        | ||||||||||||||||||||    
T  43549058 gctaaagttgcacaagatgattcagatgattcattattgatgatggttacaacaaccagtactgagagctgcaattcagaaagttggttcttagatactg 43549157  T
Q  255 gttgttataatcatatgactaaaaacaagacatggtt 291  Q
    |||||| |||||| ||||| | |||||||||||||||    
T  43549158 gttgttctaatcacatgac-agaaacaagacatggtt 43549193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 21847473 - 21847519
Alignment:
Q  24 ctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||||| |||||||||||||||||||| ||||| | |||||||||    
T  21847473 ctgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 21847519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 9697927 - 9697972
Alignment:
Q  25 tgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  9697927 tgcgctatcaaattggcatcaagagcctttggtttcgttctaaggg 9697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 54171663 - 54171610
Alignment:
Q  17 tgatttgctgcgctaacaaattggcatcaagagcctgtggttccattctaaggg 70  Q
    |||||| |||||||| |||||||||||| ||||||| ||||| | |||||||||    
T  54171663 tgattttctgcgctatcaaattggcatctagagcctttggtttcgttctaaggg 54171610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1186 times since January 2019
Visitors: 3665