View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_high_8 (Length: 317)
Name: NF0539_high_8
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 29099140 - 29098858
Alignment:
| Q |
5 |
gagcagcacagactaataccaaccatatggtcaaaccaacccagaaagctcgatttttccctaatccagcaggaggtctccacacaagtaagtccaaaag |
104 |
Q |
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| T |
29099140 |
gagcagcaccaactaataccaaccatatggtcaaaccaacccagaaagctcgatttttccctaatccagctggaggtctccacacaagtaagtccaaaag |
29099041 |
T |
|
| Q |
105 |
gttatctctagacgatggaaatggactgttaactgttccactctttcgatccttgtttttatcgctccatgttcccacataactacagatataaaattaa |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29099040 |
gttatctctagacgatggaaacggactgttaactgttccactctttcgatccttgtttttatcgctccatgttcccgcataactacagatataaaattaa |
29098941 |
T |
|
| Q |
205 |
taaatacatgatatatcttattttctcaaagtcacaaaagtaacatccataacagtaatatagagttttcagttataaacaaac |
288 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
29098940 |
taaatacatgatatatcttattttctcaaagtc-caaaagtaacatcaataacagtaatttagagttttcagttataaacaaac |
29098858 |
T |
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