View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0539_low_1 (Length: 988)
Name: NF0539_low_1
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_1 |
 | |
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| [»] scaffold0114 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 280 - 885
Target Start/End: Original strand, 14720843 - 14721444
Alignment:
| Q |
280 |
gaccaattgctctagccaacttcaaattcttgattatttccaaaattctagcagacaaattggcaccttttatgaatttgattatttctcctaagcaaag |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14720843 |
gaccaattgctctagccaacttcaaattcaagattatttccaaaattctagcagacagattggcaccttttatgaatttgattatttctcctgagcaaag |
14720942 |
T |
|
| Q |
380 |
aggcttcattaaaggtaagaacattaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14720943 |
aggcttcattaaaggtaagaacattaaagatggcatctacatcacttcaaaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagttttc |
14721042 |
T |
|
| Q |
480 |
aaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattc |
579 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14721043 |
aaggtagacatctcaaaagcttttaatacattggagtggaaattgcttcttagtgtattaag----tttggttttaatgatactttatgttcttggattc |
14721138 |
T |
|
| Q |
580 |
atacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtc |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
14721139 |
atacaatcttaaaatttgctactctttcaatctatgtcaatggcaaccagaatgattattttcattgtaagagaaaagtcaggcagggtgaccccctgtc |
14721238 |
T |
|
| Q |
680 |
tcttcttctcttctgtattgttgaggatgtgctcagcatgagtatttccaatctggtgaatcaaggaattgtggaacacattaaaggttcgagataaaca |
779 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
14721239 |
tcctcttctcttttgtattgttgaggatgtgctcatcatgagtatttccaatctagtgaatcaatgaattgtggaacgcattaaaggttcaagataaaca |
14721338 |
T |
|
| Q |
780 |
cacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagcttttcaactctta |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
14721339 |
cacgttccatctcactctttatatgctgacgacatcaggatattttttgcaaaggtaaaatctcctccattcatgctcttatgtagcttttcaactctta |
14721438 |
T |
|
| Q |
880 |
tgctca |
885 |
Q |
| |
|
|||||| |
|
|
| T |
14721439 |
tgctca |
14721444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 8 - 550
Target Start/End: Complemental strand, 28187239 - 28186697
Alignment:
| Q |
8 |
tctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgcacctggt |
107 |
Q |
| |
|
||||||||| || |||||||||||||| | || || ||||||||| || | ||||| ||||| | ||||||||||||||| ||||| || || || || |
|
|
| T |
28187239 |
tctcattactgaagatgtgaacaatcttctaacaagacttcctactgcatcagagatccatcaagttgtgctagcaatgaataaggagggagcccccagt |
28187140 |
T |
|
| Q |
108 |
ccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagagttatttaccagagattggattc |
207 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| ||| |||||||| |||||||| || |||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
28187139 |
ccagatggttttggtgcggtttttttccaaaattactgggacattgtgaaaaatgatgtaattaatgcaattttagagttctttactagagattggattc |
28187040 |
T |
|
| Q |
208 |
ttcccaacttcaatgcaaacacaatcatccttattcctaaagttcctaatgttactaatgttggacagtatagaccaattgctctagccaacttcaaatt |
307 |
Q |
| |
|
| ||||||||||||||||||||||||||| | | ||| ||| |||| ||| |||||||||||| || || |||||||||||| |||| || ||||| || |
|
|
| T |
28187039 |
tccccaacttcaatgcaaacacaatcatcttgactccgaaaattccagatgctactaatgttggtcattacagaccaattgctttagcaaatttcaagtt |
28186940 |
T |
|
| Q |
308 |
cttgattatttccaaaattctagcagacaaattggcaccttttatgaatttgattatttctcctaagcaaagaggcttcattaaaggtaagaacattaaa |
407 |
Q |
| |
|
| |||||| || |||||||||||||||| |||||| || |||||||||||||||||||| || |||||||||||||||| ||||| | || || ||| |
|
|
| T |
28186939 |
caagattatctctaaaattctagcagacagattggctccctttatgaatttgattatttcaccagagcaaagaggcttcatcaaaggaagaaatatcaaa |
28186840 |
T |
|
| Q |
408 |
gatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatg |
507 |
Q |
| |
|
||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
28186839 |
gatggtatttgtatcacatcagaagcaataaatcatctccatcaaaaagcatatgcagggaatttacctttcaaggttgacatctcaaaggcttttgaca |
28186740 |
T |
|
| Q |
508 |
cattggagtgaaaatttcttcttagtgtattaagtaagtttgg |
550 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||| |||||||| |
|
|
| T |
28186739 |
cattggagtggaaatttcttcttactgtgttaagaaagtttgg |
28186697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14720600 - 14720824
Alignment:
| Q |
1 |
ttccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
14720600 |
ttccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatatgctagcaatgaacaaggatggcgc |
14720699 |
T |
|
| Q |
101 |
acctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagagttatttaccagagat |
200 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
14720700 |
atctggtccagatggttatggtgcaagtttttcccaaacttactgggagattgtgaagaatgatgtcatcattgcagttttagatttatttaccagagat |
14720799 |
T |
|
| Q |
201 |
tggattcttcccaacttcaatgcaa |
225 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
14720800 |
tggattctttccaacttcaatgcaa |
14720824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 639 - 888
Target Start/End: Complemental strand, 28186641 - 28186394
Alignment:
| Q |
639 |
tttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctcttctgtattgttgaggatgtgctcagcatgagtatttccaatctggtga |
738 |
Q |
| |
|
|||||||| |||||| || ||||||| ||||||||| |||| | |||||| |||||||||| ||||||||||||||||| ||| || ||||||| ||| |
|
|
| T |
28186641 |
tttcattgcaagagagaagtcaggcagggtgaccccttgtcccctcttcttttctgtattgctgaggatgtgctcagcaggagcatcaccaatcttgtgc |
28186542 |
T |
|
| Q |
739 |
atcaaggaattgtggaacacattaaaggttcgagataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaa |
838 |
Q |
| |
|
| ||||||| ||||| | || |||||||| |||| |||||| ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
28186541 |
aacaaggaaaggtggagcttatcaaaggttcaagatcaacacatgttccttctcattctttatatgctgacgacattatgata--ttttgcaaaggtaaa |
28186444 |
T |
|
| Q |
839 |
atctcttccattcatgctcttatgcagcttttcaactcttatgctcaagc |
888 |
Q |
| |
|
|| || | |||||||||||| |||| ||||||||||| |||| |||||| |
|
|
| T |
28186443 |
atttcctatattcatgctcttctgcaacttttcaactcatatgatcaagc |
28186394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 771 - 888
Target Start/End: Complemental strand, 12220640 - 12220525
Alignment:
| Q |
771 |
agataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagctttt |
870 |
Q |
| |
|
|||| |||||| ||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
12220640 |
agatcaacacatgttccttctcattccttatatgctgacgacattatgatatttt--gcaaaggtaaaatctcctctattcatgctcttatgcaactttt |
12220543 |
T |
|
| Q |
871 |
caactcttatgctcaagc |
888 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
12220542 |
caactcatatgctcaagc |
12220525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 192 - 715
Target Start/End: Complemental strand, 19216673 - 19216150
Alignment:
| Q |
192 |
accagagattggattcttcccaacttcaatgcaaacacaatcatccttattcctaaagttcctaatgttactaatgttggacagtatagaccaattgctc |
291 |
Q |
| |
|
|||| |||||||||||| || || |||||||||||||| ||||| || ||||||||||| || ||| | || |||| ||| ||| |||| ||||| |
|
|
| T |
19216673 |
accaaagattggattctcccaaatttcaatgcaaacaccatcattctaattcctaaagtggctgatgcttggaaagttgaacaatatcgacctattgcct |
19216574 |
T |
|
| Q |
292 |
tagccaacttcaaattcttgattatttccaaaattctagcagacaaattggcaccttttatgaatttgattatttctcctaagcaaagaggcttcattaa |
391 |
Q |
| |
|
|||| ||||| || ||| || || ||||| || || || |||| |||||| || ||||||| | ||||| ||||| | |||||||| ||||| || |
|
|
| T |
19216573 |
tagctaactttaagttcaaaataatctccaagatacttgctgacagattggctccaattatgaagtctattatctctccgcaacaaagaggattcataaa |
19216474 |
T |
|
| Q |
392 |
aggtaagaacattaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatc |
491 |
Q |
| |
|
||| | ||| || |||||||| |||||||| || ||||||| ||| || ||||||||||| ||| ||| |||||| ||| ||||||| || || || || |
|
|
| T |
19216473 |
agggaggaatatcaaagatggaatctgcattacctcagaagtaattaaccaccttcatcacaaatcttttgcaggtaatctagcttttaaagtggatatt |
19216374 |
T |
|
| Q |
492 |
tcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaa |
591 |
Q |
| |
|
|| ||||||||||| ||||||| || |||||| | || || || | |||||||||||||| ||| | || || ||||||||||||||||| | | |
|
|
| T |
19216373 |
tccaaagcttttgacacattggaatggaaatttttgctcagagttctcagtaagtttggtttctgtgagaaattgtgctcttggattcatacaattctca |
19216274 |
T |
|
| Q |
592 |
aatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctctt |
691 |
Q |
| |
|
||| || ||||| || || | || ||||| || || ||||| || |||||||| | ||| | | ||||| || ||||| || |||| ||||||||| |
|
|
| T |
19216273 |
aatccgcaactctctccatatcagttaatgggaaacaaaatggatactttcattgccaaagaggagtgaggcagggggaccctctatctcctcttctctt |
19216174 |
T |
|
| Q |
692 |
ctgtattgttgaggatgtgctcag |
715 |
Q |
| |
|
||||||| ||| ||||||||||| |
|
|
| T |
19216173 |
ttgtattgctgaagatgtgctcag |
19216150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 709
Target Start/End: Original strand, 12115073 - 12115185
Alignment:
| Q |
597 |
gctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctcttctgta |
696 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||| | |||| ||||| ||||| || |||| |||||||| || | |
|
|
| T |
12115073 |
gctactctttcaatatctgtaaatggtaagcaaaatggttattttcattgtaagaggggagtcagacaaggagacccgctatctccccttctcttttgca |
12115172 |
T |
|
| Q |
697 |
ttgttgaggatgt |
709 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
12115173 |
ttgctgaagatgt |
12115185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 18923626 - 18923541
Alignment:
| Q |
421 |
tcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgat |
506 |
Q |
| |
|
||||||| ||||| || || || |||||||| ||||||| |||||| || || |||||||||||||| || || |||||||||||| |
|
|
| T |
18923626 |
tcacttctgaagctattaaccatcttcatcataaagcttttgcaggtaacttggctttcaaggtagatatttctaaagcttttgat |
18923541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 862
Target Start/End: Complemental strand, 19216073 - 19216005
Alignment:
| Q |
792 |
cactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatg |
862 |
Q |
| |
|
|||||| ||||||| || |||||||||||| || |||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
19216073 |
cactctctatatgcagatgacatcatgata--ttctgcaaaggtagaatctcttctattcaggctcttatg |
19216005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 14777655 - 14777502
Alignment:
| Q |
97 |
gtgcacctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagagttatttaccag |
196 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| ||||| |||||||| | ||| ||||| ||| | ||||| |||||||| | ||||| || ||||| | |
|
|
| T |
14777655 |
gtgcccctggtccggatgggtttggtgcaaatttttatcaaacttattgggatattgttaagcaggatgtgatcaatgctgtattagaattttttactaa |
14777556 |
T |
|
| Q |
197 |
agattggattcttcccaacttcaatgcaaacacaatcatccttattcctaaagt |
250 |
Q |
| |
|
||||||| | ||||| || |||||| | ||||| || | |||||||||||||| |
|
|
| T |
14777555 |
agattggttgcttcctaatttcaattctaacaccattgttcttattcctaaagt |
14777502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 888
Target Start/End: Original strand, 7572989 - 7573866
Alignment:
| Q |
8 |
tctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgcacctggt |
107 |
Q |
| |
|
||||||||| || ||||| || ||||| |||| || ||||||||| || | ||||||||||| | ||||||| ||||||||||||| || || || ||| |
|
|
| T |
7572989 |
tctcattactgaagatgtaaataatctactgacaagacttcctacttcatcagagattcatcaagctgtgctatcaatgaacaaggagggagctccaggt |
7573088 |
T |
|
| Q |
108 |
ccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagagttatttaccagagattggattc |
207 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||| | ||| |||||| | |||||||| || ||||||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
7573089 |
ccagatggttttggtgcggtttttttccaaagttattgggacattgtggaaaatgatgtaattaatgcagttttggagttctttacaagagattggattc |
7573188 |
T |
|
| Q |
208 |
ttcccaacttcaatgcaaacacaatcatccttattcctaaagttcctaatgttactaatgttggacagtatagaccaattgctctagccaacttcaaatt |
307 |
Q |
| |
|
| |||||||||||||| |||||||||||| | ||||||||| ||||| ||| |||||||||||| || || |||||||||||| |||| || ||||| || |
|
|
| T |
7573189 |
tccccaacttcaatgccaacacaatcatcttgattcctaaaattcctgatgctactaatgttggtcattacagaccaattgctttagcaaatttcaagtt |
7573288 |
T |
|
| Q |
308 |
cttgattatttccaaaattctagcagacaaattggcaccttttatgaatttgattatttctcctaagcaaagaggcttcattaaaggtaagaacattaaa |
407 |
Q |
| |
|
| |||||| || |||||||||| ||||| |||||| || ||||||||||||||||| || || |||||||||||||||| ||||| | || |||||| |
|
|
| T |
7573289 |
caagattatctctaaaattctagtagacagattggctccctttatgaatttgattatctcaccagagcaaagaggcttcatcaaaggaagaaatattaaa |
7573388 |
T |
|
| Q |
408 |
gatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatg |
507 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| | |||||| |
|
|
| T |
7573389 |
gatggtatctgtatcacatcagaagcaataaatcatcaccatcaaaaagcatatgcagggaatttggctttcaaggttgacatctcaaaggtttttgaca |
7573488 |
T |
|
| Q |
508 |
cattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgctactctttc |
607 |
Q |
| |
|
| | ||||| | |||||||||| | || |||| |||||||| || ||||||| || || || ||||| | ||||| |||| | |||||||||||| |
|
|
| T |
7573489 |
cgctcgagtggacatttcttctttg-gtgctaagaaagtttggattcaatgatagattttgctcctggatcaacacaattctaaactctgctactctttc |
7573587 |
T |
|
| Q |
608 |
aatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctcttctgtattgttgaggat |
707 |
Q |
| |
|
||||| |||||||||||| || ||||| || || ||||| |||||| | ||||||| ||||||||| |||| |||||||| |||||||||| ||||||| |
|
|
| T |
7573588 |
aatctctgtcaatggcaaacaaaatggatacttccattgcaagagaggagtcaggcagggtgaccccttgtcccttcttcttttctgtattgctgaggat |
7573687 |
T |
|
| Q |
708 |
gtgctcagcatgagtatttccaatctggtgaatcaaggaattgtggaacacattaaaggttcgagataaacacacgttccatctcactctttatatgctg |
807 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| | || ||| |||| | || |||||||| |||| |||||| ||||| ||||| || |||||||||| |
|
|
| T |
7573688 |
gtgctcagcagaagtatcaccaatcttgtgcaacagggatagttggagcttatcaaaggttcaagatcaacacatgttccttctcattccttatatgctg |
7573787 |
T |
|
| Q |
808 |
acgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagcttttcaactcttatgctcaagc |
888 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
7573788 |
acgacattatgata--ttttgcaaaggtaaaatctcctctattcatgctcttatgcaacttttcaactcatatgctcaagc |
7573866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 375 - 715
Target Start/End: Original strand, 22562584 - 22562924
Alignment:
| Q |
375 |
caaagaggcttcattaaaggtaagaacattaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttag |
474 |
Q |
| |
|
|||||||| || |||||||||| ||||| || ||||| || || ||||||| || ||||||||||| |||||||||||| |||||| ||||| ||| |
|
|
| T |
22562584 |
caaagaggttttattaaaggtagaaacatcaaggatggtatttgtatcacttatgaggcaatcaatcatcttcatcagaaatcttatgtgggaaacctag |
22562683 |
T |
|
| Q |
475 |
ctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatg-atactttatgttctt |
573 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||| | | || || || || || || | ||| |||||||| |||||||| |||| | | ||| ||||||| |
|
|
| T |
22562684 |
cttttaaggtggacatctccaaagcctttgatactcttgaatggaagttcctgctaactgttttaagtaaatttggtttcaatgcacaattt-tgttctt |
22562782 |
T |
|
| Q |
574 |
ggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccc |
673 |
Q |
| |
|
|||||||||| ||| | || | ||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| ||| | | || |||||||| || |
|
|
| T |
22562783 |
ggattcataccatcctcaagtctgctactctctctatctctgttaatggcaagcagaatggttactttcattgtaaaagaggagtgagacaaggtgatcc |
22562882 |
T |
|
| Q |
674 |
cctgtctcttcttctcttctgtattgttgaggatgtgctcag |
715 |
Q |
| |
|
|| || | ||||||||| ||||| ||||||||| ||||| |
|
|
| T |
22562883 |
tctttcacctcttctcttttgtatatctgaggatgttctcag |
22562924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 162 - 583
Target Start/End: Original strand, 10010212 - 10010633
Alignment:
| Q |
162 |
gatgtcatcaatgcagatttagagttatttaccagagattggattcttcccaacttcaatgcaaacacaatcatccttattcctaaagttcctaatgtta |
261 |
Q |
| |
|
|||||||| ||||||| ||| || || || || | ||||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||| | |
|
|
| T |
10010212 |
gatgtcataaatgcagttttggaatttttcacaaaagattggatactccccaatttcaacgcaaacacaatcattcttattcctaaagttccggatgctt |
10010311 |
T |
|
| Q |
262 |
ctaatgttggacagtatagaccaattgctctagccaacttcaaattcttgattatttccaaaattctagcagacaaattggcaccttttatgaatttgat |
361 |
Q |
| |
|
| || || || || |||||||| || |||| || ||||| ||| ||| ||||| || ||| | || |||| | | || ||| | ||||| || |
|
|
| T |
10010312 |
tacaggtgggccaatacagaccaatagccttagcaaatttcaagttcaagatcatttcgaagattttggctgacagactagctcctatcatgaacaacat |
10010411 |
T |
|
| Q |
362 |
tatttctcctaagcaaagaggcttcattaaaggtaagaacattaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttat |
461 |
Q |
| |
|
||||||||| |||||||||| ||||| | ||| | |||||||| ||||| || || ||||||| ||||| ||||| || |||||||| ||| ||| |
|
|
| T |
10010412 |
catttctcctgagcaaagaggtttcataagaggcagaaacattaaggatggaatttgtgtcacttctgaagccatcaaccatcttcatcaaaaatctttc |
10010511 |
T |
|
| Q |
462 |
gcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgata |
561 |
Q |
| |
|
||||| ||| |||||||||| ||||| || || ||||| |||||| | | || || ||||| || || ||||| | || ||||||||||||||||||| |
|
|
| T |
10010512 |
gcaggtaatctagctttcaaagtagatatttctaaagcgtttgataccctagaatggaaattcctcctcagtgttcttagcaagtttggttttaatgata |
10010611 |
T |
|
| Q |
562 |
ctttatgttcttggattcatac |
583 |
Q |
| |
|
|| || |||||||||||||| |
|
|
| T |
10010612 |
agttctgctcttggattcatac |
10010633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 19282664 - 19282606
Alignment:
| Q |
824 |
ttttgcaaaggtaaaatctcttccattcatgctcttatgcagcttttcaactcttatgc |
882 |
Q |
| |
|
|||||||||||||| || | || || |||||||||||||||||||||||||||||||| |
|
|
| T |
19282664 |
ttttgcaaaggtaagatagcatcaatccatgctcttatgcagcttttcaactcttatgc |
19282606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 23779 - 23700
Alignment:
| Q |
426 |
tcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttga |
505 |
Q |
| |
|
|||||||| |||||||| || || | ||||||| |||||| ||| | ||||| |||||||||||||| ||||||||||| |
|
|
| T |
23779 |
tcagaagcgatcaatcatctacacaacaaagcttttgcaggtaatcttgcttttaaggtagacatctccaaagcttttga |
23700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 424 - 586
Target Start/End: Original strand, 23682887 - 23683049
Alignment:
| Q |
424 |
cttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatt |
523 |
Q |
| |
|
|||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
|
|
| T |
23682887 |
cttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagtt |
23682986 |
T |
|
| Q |
524 |
tcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
586 |
Q |
| |
|
||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
|
|
| T |
23682987 |
ccttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23683049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 424 - 586
Target Start/End: Complemental strand, 23851924 - 23851762
Alignment:
| Q |
424 |
cttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatt |
523 |
Q |
| |
|
|||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
|
|
| T |
23851924 |
cttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagtt |
23851825 |
T |
|
| Q |
524 |
tcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
586 |
Q |
| |
|
||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
|
|
| T |
23851824 |
ccttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23851762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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