View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_11 (Length: 381)
Name: NF0539_low_11
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_11 |
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| [»] scaffold1031 (1 HSPs) |
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| [»] scaffold1037 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 172 - 373
Target Start/End: Original strand, 29005689 - 29005890
Alignment:
| Q |
172 |
tatgttgcctgggctggaacttttgtagaaccagcttgttaaagtttttaatttataagaagccacatacatggaccctcctccatctcttgcctgcaaa |
271 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29005689 |
tatgttggctgggctggaacttttgtggaaccagcttgttaaagattttcatttataagaagccacatacatggaccctcctccatatcttgcctgcaaa |
29005788 |
T |
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| Q |
272 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatcttgctacttttgtctctg |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29005789 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatattgctacttttgtctctg |
29005888 |
T |
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| Q |
372 |
ct |
373 |
Q |
| |
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|| |
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| T |
29005889 |
ct |
29005890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 29005579 - 29005632
Alignment:
| Q |
61 |
gttggtcagccattaaaaaagcctccccaaaatgcctgaaaatacacttttaaa |
114 |
Q |
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| T |
29005579 |
gttggtcagccattaaaaaagcctccccaaaatgcctgaaaatacacttttaaa |
29005632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 2492 - 2525
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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| T |
2492 |
aaaaaacattgagatttttcaaatacataaatgt |
2525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 216972 - 216939
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
216972 |
aaaaaacattgagatttttcaaatacataaatgt |
216939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 693532 - 693499
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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| T |
693532 |
aaaaaacattgagatttttcaaatacataaatgt |
693499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 697741 - 697708
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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| T |
697741 |
aaaaaacattgagatttttcaaatacataaatgt |
697708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 730595 - 730562
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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|
| T |
730595 |
aaaaaacattgagatttttcaaatacataaatgt |
730562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 854490 - 854457
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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| T |
854490 |
aaaaaacattgagatttttcaaatacataaatgt |
854457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 43737944 - 43737975
Alignment:
| Q |
31 |
aaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43737944 |
aaaacattgagatttttcaaatacataaatgt |
43737975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 2373 - 2406
Alignment:
| Q |
29 |
aaaaaacattgagatttttcaaatacataaatgt |
62 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
2373 |
aaaaaatattgagatttttcaaatacataaatgt |
2406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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