View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0539_low_13 (Length: 359)

Name: NF0539_low_13
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0539_low_13
NF0539_low_13
[»] chr7 (4 HSPs)
chr7 (13-325)||(13585547-13585859)
chr7 (171-209)||(21050154-21050192)
chr7 (163-195)||(22696355-22696387)
chr7 (168-196)||(23637026-23637054)
[»] chr1 (4 HSPs)
chr1 (141-215)||(30043580-30043654)
chr1 (163-223)||(37046995-37047055)
chr1 (171-222)||(6128000-6128051)
chr1 (163-196)||(39964542-39964575)
[»] chr4 (5 HSPs)
chr4 (164-223)||(37980154-37980213)
chr4 (168-223)||(29195105-29195160)
chr4 (163-196)||(38206131-38206164)
chr4 (171-223)||(21344827-21344879)
chr4 (164-196)||(56409988-56410020)
[»] chr3 (6 HSPs)
chr3 (164-216)||(34844388-34844440)
chr3 (164-223)||(42799754-42799813)
chr3 (161-195)||(26158849-26158883)
chr3 (182-223)||(1712834-1712875)
chr3 (171-236)||(18316512-18316577)
chr3 (171-216)||(53863881-53863926)
[»] chr5 (2 HSPs)
chr5 (164-223)||(16172990-16173049)
chr5 (164-196)||(15485426-15485458)
[»] chr8 (3 HSPs)
chr8 (163-196)||(40136968-40137001)
chr8 (172-224)||(7507419-7507471)
chr8 (163-223)||(32992788-32992851)
[»] chr2 (3 HSPs)
chr2 (171-223)||(41908651-41908704)
chr2 (164-196)||(6099525-6099557)
chr2 (171-223)||(43964002-43964054)
[»] chr6 (2 HSPs)
chr6 (164-196)||(6384009-6384041)
chr6 (164-196)||(6691557-6691589)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 13585859 - 13585547
Alignment:
Q  13 aatatatacaaaatcagttacaaactacggttaaatcgtagatcgcagacatattttttctttggaaactccggttgggggaccaatcgtagagtacacc 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  13585859 aatatatacaaaatcagttacaaactacggttatatcgtagatcgaagacatattttttctttggaaactccggttgggggaccaattgtagagtacact 13585760  T
Q  113 aaaggaagactcattgactaacctacataaattggcactggaaggatttgaaacctgcgaccttgagaggagcacactccaaggcctcaaacctacatca 212  Q
      |||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  13585759 ggaggaagactcgttgactaatcaacataaattggcaccggaaggatttgaaacctgcgaccttgagaggagcaaactccaaggtctcaaacctacatca 13585660  T
Q  213 ccagaccaaccatcgtgggtatgactaagaagtttacttctctattaactaaaacaaccactttagagatactcttaatgagcattattgcaataagttc 312  Q
    |||||||||||  ||||||||||||||| |||||| | | ||||||||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||    
T  13585659 ccagaccaacccacgtgggtatgactaataagttttcgtgtctattaactaatgcaacccctttggagatacccttaatgagcattattgcaataagttc 13585560  T
Q  313 tatttactaaccg 325  Q
    |||||||||||||    
T  13585559 tatttactaaccg 13585547  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 21050154 - 21050192
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctaca 209  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  21050154 gaccttgagaggagcacactccaaggtctcaagcctaca 21050192  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 22696387 - 22696355
Alignment:
Q  163 aaacctgcgaccttgagaggagcacactccaag 195  Q
    ||||||| |||||||||||||||||||||||||    
T  22696387 aaacctgagaccttgagaggagcacactccaag 22696355  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 23637026 - 23637054
Alignment:
Q  168 tgcgaccttgagaggagcacactccaagg 196  Q
    |||||||||||||||||||||||||||||    
T  23637026 tgcgaccttgagaggagcacactccaagg 23637054  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 30043580 - 30043654
Alignment:
Q  141 aaattggcactggaaggatttgaaacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcacca 215  Q
    ||||||||| ||| ||||||| ||||||| |||||||| || |||||||||||||| ||||| |||||| |||||    
T  30043580 aaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 30043654  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 37047055 - 37046995
Alignment:
Q  163 aaacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    ||||||| |||||||||||||||||||||||||| | ||| || ||| |||||||||||||    
T  37047055 aaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaacc 37046995  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 6128000 - 6128051
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaac 222  Q
    ||||||||||||||||| |||||||| | |||||| ||| ||||||||||||    
T  6128000 gaccttgagaggagcacgctccaaggtcccaaaccaacaccaccagaccaac 6128051  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 39964575 - 39964542
Alignment:
Q  163 aaacctgcgaccttgagaggagcacactccaagg 196  Q
    ||||||| ||||||||||||||||||||||||||    
T  39964575 aaacctgagaccttgagaggagcacactccaagg 39964542  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 37980154 - 37980213
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    |||||| |||||||||||||||||||||||||| | ||| || |||||||||| ||||||    
T  37980154 aacctgagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaacc 37980213  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 29195160 - 29195105
Alignment:
Q  168 tgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    ||||||||||||||||||||||||||||| | ||| || ||| |||||| ||||||    
T  29195160 tgcgaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacc 29195105  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 38206131 - 38206164
Alignment:
Q  163 aaacctgcgaccttgagaggagcacactccaagg 196  Q
    ||||||| ||||||||||||||||||||||||||    
T  38206131 aaacctgagaccttgagaggagcacactccaagg 38206164  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 21344879 - 21344827
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    |||||||||||||||||||||||||| | ||| || |||||| ||| ||||||    
T  21344879 gaccttgagaggagcacactccaaggtcccaagccaacatcatcaggccaacc 21344827  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 56410020 - 56409988
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaagg 196  Q
    |||||| ||||||||||||||||||||||||||    
T  56410020 aacctgagaccttgagaggagcacactccaagg 56409988  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 34844440 - 34844388
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccag 216  Q
    |||||| |||||||||||||||||||||||||| ||||| || ||| ||||||    
T  34844440 aacctgagaccttgagaggagcacactccaaggtctcaagccaacaacaccag 34844388  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 42799754 - 42799813
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    |||||| |||||||||||||||||||||||||| | ||| || ||| |||||| ||||||    
T  42799754 aacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacc 42799813  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 26158883 - 26158849
Alignment:
Q  161 tgaaacctgcgaccttgagaggagcacactccaag 195  Q
    ||||||||| |||||||||||||||||||||||||    
T  26158883 tgaaacctgagaccttgagaggagcacactccaag 26158849  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 1712834 - 1712875
Alignment:
Q  182 gagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  1712834 gagcacactccaaggtctcaagccaacatcaccagaccaacc 1712875  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 18316512 - 18316577
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaaccatcgtgggtatga 236  Q
    |||||||||||||||||||||||||| | ||| ||  || |||||||||||||   ||||||||||    
T  18316512 gaccttgagaggagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggtatga 18316577  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 53863881 - 53863926
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctacatcaccag 216  Q
    |||||||||||||||||||||||||| | ||| || ||||||||||    
T  53863881 gaccttgagaggagcacactccaaggtcccaagccaacatcaccag 53863926  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 16172990 - 16173049
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    |||||| |||||||||||||||||||||||||| ||||| || |||  ||||| ||||||    
T  16172990 aacctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaacc 16173049  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 15485426 - 15485458
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaagg 196  Q
    |||||| ||||||||||||||||||||||||||    
T  15485426 aacctgagaccttgagaggagcacactccaagg 15485458  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 40136968 - 40137001
Alignment:
Q  163 aaacctgcgaccttgagaggagcacactccaagg 196  Q
    ||||||| ||||||||||||||||||||||||||    
T  40136968 aaacctgagaccttgagaggagcacactccaagg 40137001  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 7507419 - 7507471
Alignment:
Q  172 accttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacca 224  Q
    ||||||||||||||||||| ||| | |||||||| ||| ||||||| ||||||    
T  7507419 accttgagaggagcacacttcaaagtctcaaaccaacaacaccagatcaacca 7507471  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 32992851 - 32992788
Alignment:
Q  163 aaacctgcgaccttgag-aggagcacactccaagg--cctcaaacctacatcaccagaccaacc 223  Q
    ||||||| ||||||||| |||||||||||||||||  || ||| || |||||||||||||||||    
T  32992851 aaacctgggaccttgaggaggagcacactccaaggtcccacaagccaacatcaccagaccaacc 32992788  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 41908651 - 41908704
Alignment:
Q  171 gaccttgag-aggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||||| ||||||    
T  41908651 gaccttgaggaggagcacactccaaggtctcaaaccgacaccaccaggccaacc 41908704  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 6099525 - 6099557
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaagg 196  Q
    |||||| ||||||||||||||||||||||||||    
T  6099525 aacctgagaccttgagaggagcacactccaagg 6099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 43964002 - 43964054
Alignment:
Q  171 gaccttgagaggagcacactccaaggcctcaaacctacatcaccagaccaacc 223  Q
    |||||||||||||||||||||||||| | |||||| |||  || |||||||||    
T  43964002 gaccttgagaggagcacactccaaggtcccaaaccaacactactagaccaacc 43964054  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 6384009 - 6384041
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaagg 196  Q
    |||||| ||||||||||||||||||||||||||    
T  6384009 aacctgagaccttgagaggagcacactccaagg 6384041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 6691557 - 6691589
Alignment:
Q  164 aacctgcgaccttgagaggagcacactccaagg 196  Q
    |||||| ||||||||||||||||||||||||||    
T  6691557 aacctgagaccttgagaggagcacactccaagg 6691589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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