View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_19 (Length: 305)
Name: NF0539_low_19
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 48060783 - 48060956
Alignment:
| Q |
53 |
gccctagctgttgcaattttccgtttagctcacggcgctagttacaattccgttgcccggagattcggaatttctccctccgatgcttgccgtgcttttt |
152 |
Q |
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| T |
48060783 |
gccctagcagctgcaattttccgtttagctcacggcgctagttacaattccgttgcccggagattcggtatttctccctccgatgcttgccgtgcttttt |
48060882 |
T |
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| Q |
153 |
tcactgtttgtaaagcggttgatgataatttaggaaatttgtttgagcttcgaactgactctgattgggttgtg |
226 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
48060883 |
tcactgtttgtaaagcggttaatgataatttaggaaatttgtttgagcttcgaactgattctgatagggttgtg |
48060956 |
T |
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