View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0539_low_21 (Length: 303)
Name: NF0539_low_21
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_21 |
 | |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold1415 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 22899132 - 22898864
Alignment:
| Q |
13 |
aatatttaaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaacctt |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22899132 |
aatatttaaatatctacaattcgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgtcctgtatgaaaattgttttgaggaacctt |
22899033 |
T |
|
| Q |
113 |
aaacctccaaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22899032 |
aaacctccaaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatat |
22898933 |
T |
|
| Q |
213 |
ttccaacaaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22898932 |
ttccaacaaaattgttgttattcaagtgtagatattgtaggttaggaaggttatatcctgtttttgatg |
22898864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 24872875 - 24872614
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||| |||||| | | || ||| || |||||||| ||||||| ||| |
|
|
| T |
24872875 |
aaatatctacaattcgtcaaggaagtaaagaattgatgagaatcttctattgtcaaattgttgccatatgtgtaaaatgatttgaggagccttaaatctc |
24872776 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | |||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
24872775 |
caaaagcaatattgggtagagttccactgaatgcattgtcactcaattgaaatacaataagattagaagagttgaatatactatttggaatatttccaac |
24872676 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | || ||| |||||||| || | |||||||||||||||||| || ||||||| |
|
|
| T |
24872675 |
aaaattgttatgatccaattgtagatactgcaagctaggaaggttatatcccgtatttgatg |
24872614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25393034 - 25393295
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| ||||||| | |||||| | | || ||||| |||||| ||| |
|
|
| T |
25393034 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttcaattgtcaaattgttgtcatatatgaatagcgattcaaggaatcttaaatctc |
25393133 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| || |||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25393134 |
caaaagcagtattgggtagagttccactgaatgcattgtcatccaattgaaattcaataagattagaagagttgaatatgttatttggaatatttccaac |
25393233 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | |||||||| ||||||||| || ||||||||| ||||||| || ||||||| |
|
|
| T |
25393234 |
aaaattgttatcattcaagtatagatattgcagactaggaaggctatatcccgtatttgatg |
25393295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25716935 - 25717196
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||| | |||| || | || || || | |||| ||| |
|
|
| T |
25716935 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaaattgttgttatatatgcgaaacgattcaagcaatcctaaatctc |
25717034 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25717035 |
caaaagcaatattgggtagagttccactgaatgcattgtcatgcaattgaaaaataataagattagaagagttgaatatgttatttggaatatttccaac |
25717134 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | |||||||| ||||||||| ||| |||||||| ||||||| || ||||||| |
|
|
| T |
25717135 |
aaaattgttatgattcaagtatagatattgcaggttaggaaggctatatcccgtatttgatg |
25717196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25454724 - 25454985
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||| |||| ||| | || || || | |||| || |
|
|
| T |
25454724 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaaattgttgttagatatgcgaatcgattcaagcaatcctaaatctt |
25454823 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||| ||||||||||||||| |||| || |||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
25454824 |
caaaagcagtattgggtagagttccactgaatacattcgaatgcaattgaaatacaataagcttagaagagttgaatatgttatttagaatatttccaac |
25454923 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | ||||||| ||||||||| || ||||||||| ||||||| || ||||||| |
|
|
| T |
25454924 |
aaaattgttatcattcaagaatagatattgcagactaggaaggctatatcccgtatttgatg |
25454985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25606379 - 25606640
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||| | ||||| || || ||||| |||||| || |
|
|
| T |
25606379 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcatctattgtcaaattgttgtcatatatgagaaagaattcaaggaatcttaaatttc |
25606478 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| || ||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25606479 |
caaaagcaatattgggtagagttccactgaatgcgttgtcatacaattgaaaatcaatcagattagaagagttgaatatgttatttggaatatttccaac |
25606578 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | |||||||| ||||||||| | ||||||||| ||||||| || ||||||| |
|
|
| T |
25606579 |
aaaattgttttcattcaagtatagatattgcaaactaggaaggctatatcccgtatttgatg |
25606640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 25324398 - 25324657
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||| | ||||| || | ||| || || | |||| ||| |
|
|
| T |
25324398 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaaattgttgtcatctatgagaaacgatttaagcaatcctaaatctc |
25324497 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| || |||||||||| ||| ||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
25324498 |
caaaagcagtattgggtagagttccagtgaatgcattgccattcaattgaaattgaataagattagaacagttgaatatgttatttggaatatttccaac |
25324597 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttga |
279 |
Q |
| |
|
||||||||| | ||||||| ||||||||| ||| |||||||| ||||||| || ||||| |
|
|
| T |
25324598 |
aaaattgttatcattcaagaatagatattgcaggttaggaaggctatatcccgtatttga |
25324657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25806991 - 25807252
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| | |||| |||| ||||||| | ||||| || || | ||| | |||| || |
|
|
| T |
25806991 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcatatattgtcaaattgttgtcatatatgagaaagaattcaacgaatcctaaatttc |
25807090 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||| || ||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25807091 |
caaaagcaataatgggtagagttccactgaatgcgttgtcatacaattgaaaaacaataagattagaagagttgaatatgttatttggaatatttccaac |
25807190 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | |||||||||||||||||| || ||||||||| ||||||| || ||||||| |
|
|
| T |
25807191 |
aaaattgttatcattcaagtgtagatattgcagactaggaaggctatatcccgtatttgatg |
25807252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25342722 - 25342983
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||||| | | |||| || | || || || | |||| ||| |
|
|
| T |
25342722 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttcaattgtcaaattgttggtatctatgttaaacgattcaagcaatcctaaatctc |
25342821 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| | ||| | ||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25342822 |
caaaagcagtattgggtaaagttccactgaattcgttgtcagtcaattgaaaatgaataagattagaagagttgaatatgttatttggaatatttccaac |
25342921 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||||||||| ||||||| || ||||||| |
|
|
| T |
25342922 |
aaaattgttattattcaagtgtagatgttgcaggctaggaaggctatatcccgtatttgatg |
25342983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 25653046 - 25653307
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||| ||||||| | ||||| || || ||||| | |||| ||| |
|
|
| T |
25653046 |
aaatatctacaatttgtcaatgaagtaaagaattgatgagaatcttctattgtcaaattgttgtcatctatgagaaagtattcaaggaatcctaaatctc |
25653145 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
||||| |||| |||||||||||||||| ||||||||| | ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
25653146 |
taaaagaaatactgggtagagttccactgaatgcattgtctttcaattgaaactcaataagattagaagagttgaatatattatttggaatatttccaac |
25653245 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | ||||||| ||| |||||| || |||||||| ||||||| || ||||||| |
|
|
| T |
25653246 |
aaaattgttatcattcaagagtaaatattgcagattaggaaggctatatcccgtatttgatg |
25653307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 23259937 - 23260187
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||| ||| |||||| ||| ||||||||||| ||||||||||| |||||| | || | ||||| | ||||| || |||| |||||||||||||| ||| |
|
|
| T |
23259937 |
aaatgtctgcaatttcccaaagaagtaaagaattgaagagaatcatctattgtaaaatcattgttatttatgataagtgttctgaggaaccttaaatctc |
23260036 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
| |||||||||||||| |||||||| || |||| ||| | |||||||||| |||||||||| ||||| |||||||| |||||||||| ||| ||||| |
|
|
| T |
23260037 |
cgaaagcaatattgggcagagttccgctgaatgtgttgtcactcaattgaaattcaatgagattggaagagttgaatatactatttggaacattgccaac |
23260136 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcc |
270 |
Q |
| |
|
|||| |||| | |||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23260137 |
aaaactgttatgattcaagtgtaggtattgcagcataggaaggttatatcc |
23260187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 25571634 - 25571857
Alignment:
| Q |
26 |
ctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctccaaaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||||||| | |||| || || || || |||| |||||||| |
|
|
| T |
25571634 |
ctacaatttgtcaaggaagtaaagaattgatgagaatcttcgattgtcaaattgttgttatatatgtgaaacaattcaagcaatactaaatctccaaaat |
25571733 |
T |
|
| Q |
126 |
caatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaacaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||| ||| ||||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
25571734 |
caatattgggtagagttccactgaatgcattgacactcaattgaaattgaataagattagaagagttgaatatactacttggaatatttccaacaaaatt |
25571833 |
T |
|
| Q |
226 |
gttgttattcaagtgtagatattg |
249 |
Q |
| |
|
||| | || ||||||||||||||| |
|
|
| T |
25571834 |
gttatgatccaagtgtagatattg |
25571857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 25697267 - 25697363
Alignment:
| Q |
185 |
gaagaattgaatatgctatttggaatatttccaacaaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| | || ||||||||||||||| ||| |||||||| ||||||| || ||||||| |
|
|
| T |
25697267 |
gaagagttgaatatattatttggaatatttccaacaaaattgttttgatacaagtgtagatattgcaggttaggaaggctatatcccgtatttgatg |
25697363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 25697105 - 25697168
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||| |
|
|
| T |
25697105 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaaattgttgt |
25697168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 25477570 - 25477676
Alignment:
| Q |
175 |
aatgagattagaagaattgaatatgctatttggaatatttccaacaaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtt |
274 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||||||||||||||||| | || ||| || | |||||| |||||||| |||| |||||| |
|
|
| T |
25477570 |
aatgagatcagaagcgttgaatataatatttggaatatttccaacaaaattgttttgatacaacgaaagttgttgtagcttaggaaggctataacctgtt |
25477669 |
T |
|
| Q |
275 |
tttgatg |
281 |
Q |
| |
|
||||||| |
|
|
| T |
25477670 |
tttgatg |
25477676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 25312741 - 25312772
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaa |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25312741 |
aaatatctacaatttgtcaaggaagtaaagaa |
25312772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 15359 - 15098
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||| | ||| |||| || ||| ||| |||| ||| |
|
|
| T |
15359 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaatttgttgtcatatattaaaaacacttcaagggaccataaatctc |
15260 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||| || ||||||||||||||||||| |||||||| |||| ||||||||| |||| | |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
15259 |
taaaaccagtattgggtagagttccactgaatgcattcgaatccaattgaaaatcaattaacttagaagagttgaatatgttatttggaatatttccaac |
15160 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | || |||| ||||||||| || ||||||||| ||||||| || ||||||| |
|
|
| T |
15159 |
aaaattgttatgatccaagaatagatattgcagactaggaaggctatatcccgtatttgatg |
15098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 35402 - 35141
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| || ||||| | | |||||| || ||||| |||||| ||| |
|
|
| T |
35402 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctattgtcaatttattgttatatgtgaaaaacaattcaaggaatcttaaatctc |
35303 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||||||| | | |||| | | | ||| |||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
35302 |
caaaagtagtattgggtagagttccactgaatgcatttgtttccaatgcgatttgacggagcttagaagagtttaatatgttatttggaatatttccaac |
35203 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | | ||||||||||||||| || |||||||| ||||||| || ||||||| |
|
|
| T |
35202 |
aaaattgttttgaaacaagtgtagatattgcagattaggaaggctatatcccgtatttgatg |
35141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 48863 - 48605
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| | ||||| |||||| |||| | ||||| | | |||||| ||||| |||||||||| | |
|
|
| T |
48863 |
aaatatctacaacttgtcaaggaattaaagaactgatgtgaatcatctattgtcaaatagttgtaccctgtgaaaaaatatttgaagaaccttaaatttt |
48764 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
||||| | ||| || | ||||||| | ||||| ||| || ||| | || | |||||| | ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48763 |
caaaa---aaattaggaacagttccagtgaatgcgttgtgattcaagtcaactagaatgaggtgagaagcgttgaatataatatttggaatatttccaac |
48667 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | ||||| |||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
48666 |
aaaattgtttccttccaagtctagatattgtagcttaggaaggctataacctgtttttgatg |
48605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 778 - 1039
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||||| | | |||| || | || || || | |||| ||| |
|
|
| T |
778 |
aaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttcaattgtcaaattgttggtatctatgttaaaagattcaagcaatcctaaatctc |
877 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| | ||| || |||||||||| |||| || |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
878 |
caaaagcagtattgggtaaagttccactgaattcgttgtcatccaattgaaatacaataagcttagaagagttgaatatgttatttggaatatttccaac |
977 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcctgtttttgatg |
281 |
Q |
| |
|
||||||||| | || ||||||||||| || ||| |||||||| ||||||| || ||||||| |
|
|
| T |
978 |
aaaattgttttgatacaagtgtagattatgcaggttaggaaggctatatcccgtatttgatg |
1039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 10325589 - 10325836
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||| |||||||||| ||| | || ||||||| | || || | ||||||||||||||||| || |
|
|
| T |
10325589 |
aaatttctacaatttgacaaggaagtaaagaattgatgagaatcttcaattgtgaaattgttgtgaaatgtgtcaaatattttgaggaaccttaaatttc |
10325688 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||| | |||| ||||| |||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10325689 |
caa---caaaattgggtagagttccactgaatgcattaccacccaatcgaaattcaataagattagaagagttgaatatactatttggaatatttccagt |
10325785 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaaggttatatcc |
270 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
10325786 |
aaaattgttaccatacaaatgtagatattgtaggctaggaaggctatatcc |
10325836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 2848 - 2606
Alignment:
| Q |
20 |
aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctattatcaagttgttgttctgtatgaaaattgttttgaggaaccttaaacctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| || ||| |||| |||||| ||||| || | | ||| ||||||||| | |
|
|
| T |
2848 |
aaatatctacaatttgtcaaggaagtaaagaattgaagaggatcgtcgattgtcaaattgttgaaacttatgataaacgaatcgagcaaccttaaattcc |
2749 |
T |
|
| Q |
120 |
caaaagcaatattgggtagagttccactaaatgcattggaatgcaattgaaatccaatgagattagaagaattgaatatgctatttggaatatttccaac |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| | | || |||| ||| |||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
2748 |
gaaaagcattattgggtagagttccactaaattcattgtcaaccgcttcaaattcaacgagattagaagagttgaaaatactatttggaatatttccaac |
2649 |
T |
|
| Q |
220 |
aaaattgttgttattcaagtgtagatattgtaggctaggaagg |
262 |
Q |
| |
|
||| ||||| | |||||||||||| | ||| ||| |||||||| |
|
|
| T |
2648 |
aaatttgttatgattcaagtgtagtttttgcaggttaggaagg |
2606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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