View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_22 (Length: 300)
Name: NF0539_low_22
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 30794311 - 30794375
Alignment:
| Q |
72 |
ttcttcgattgtaacacataatcacgtgatcccaaatgcgaagaaaaagtttgtctagatcgctc |
136 |
Q |
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| T |
30794311 |
ttcttcgatcgtaacacatagtcatgtgattccaaatgcgaagaaaaagtttgtctagatcgctc |
30794375 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 30794415 - 30794475
Alignment:
| Q |
175 |
atcgtaattgaacacaatgcaatcgctaatcgttgattaaatcacaattatgaatctcctct |
236 |
Q |
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| T |
30794415 |
atcgtaattga-cacactgcaattggtaatcgttaattaaatcacaattatgaatctcctct |
30794475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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