View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_23 (Length: 296)
Name: NF0539_low_23
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 354482 - 354661
Alignment:
| Q |
72 |
gatttgtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtgga |
171 |
Q |
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| T |
354482 |
gatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtgga |
354581 |
T |
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| Q |
172 |
tgaagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgttatcattgtaat |
251 |
Q |
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| T |
354582 |
tgaagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccatacaattgttatcattgtaat |
354661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 10580870 - 10581030
Alignment:
| Q |
78 |
tgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaaga |
177 |
Q |
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| T |
10580870 |
tgatgctgttacttacactgagcatg-----aggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaaga |
10580964 |
T |
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| Q |
178 |
agatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgttatc |
243 |
Q |
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| T |
10580965 |
agatgaagatttgttaagctgtttctgtgtatttgaaacatgtgagtgttccgtataattgttatc |
10581030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 10575471 - 10575532
Alignment:
| Q |
79 |
gatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgttta |
140 |
Q |
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| T |
10575471 |
gatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgttta |
10575532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 39954951 - 39954885
Alignment:
| Q |
71 |
tgatttgtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgt |
137 |
Q |
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| T |
39954951 |
tgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt |
39954885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 21584703 - 21584633
Alignment:
| Q |
71 |
tgatttgtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgtttat |
141 |
Q |
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| T |
21584703 |
tgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttat |
21584633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 24497359 - 24497299
Alignment:
| Q |
77 |
gtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgt |
137 |
Q |
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||||||| ||||| |||||||| | ||||||||||||||| |||| || ||||||||||| |
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| T |
24497359 |
gtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt |
24497299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 25085120 - 25085180
Alignment:
| Q |
77 |
gtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgt |
137 |
Q |
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||||||| ||||| |||||||| | ||||||||||||||| |||| || ||||||||||| |
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| T |
25085120 |
gtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt |
25085180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 14261130 - 14261068
Alignment:
| Q |
79 |
gatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgtttat |
141 |
Q |
| |
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||||||||||| || ||||||| ||| ||||||||||| | ||||||||||||||||||||| |
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| T |
14261130 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat |
14261068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 41027654 - 41027718
Alignment:
| Q |
77 |
gtgatgctgttacttacactgaacgtgcaaggaggaagactctgactgctatggatgttgtttat |
141 |
Q |
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||||||||||||||||||| || | || ||||| |||||| | ||||||||||||||||||||| |
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| T |
41027654 |
gtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat |
41027718 |
T |
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