View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0539_low_26 (Length: 252)
Name: NF0539_low_26
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_26 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41947111 - 41947347
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
41947111 |
tttatctgctatggtaaaagatgaagatagctggttatggcattatagatttggtcatctcaattttagaggtcttaatcaattagttgataaagatatg |
41947210 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||| || ||||||||||||| | | |||| |
|
|
| T |
41947211 |
attctgggagtacctaaaattgagatacctaatatagtttgtgacacttgcttgttgggcaagcaacctagaagtgcattcaattcaagttcaacaagta |
41947310 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgt |
237 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||| |||| |
|
|
| T |
41947311 |
gatcaaatgagctgcttaatgttgtatattcatatgt |
41947347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1288621 - 1288867
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
1288621 |
tttatctgctatggtaaaagatgaagatagatggttatgacactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
1288720 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||| |||||||| ||||||| | || |||| |
|
|
| T |
1288721 |
attctaggagtacctaaaattgagatacctaacacaatttgtgatacttgcttgttgggcaagcgacctagaagtgtattcagttcaagtgcagcaagta |
1288820 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
1288821 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
1288867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 200545 - 200299
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
200545 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
200446 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
200445 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
200346 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
200345 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
200299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 315382 - 315136
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
315382 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
315283 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
315282 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
315183 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
315182 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
315136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 30408664 - 30408418
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
30408664 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
30408565 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
30408564 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
30408465 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
30408464 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
30408418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43810344 - 43810098
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
43810344 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
43810245 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
43810244 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
43810145 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
43810144 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
43810098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30697092 - 30697338
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
30697092 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
30697191 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
30697192 |
attctgggagtgcctaaaattgagatacctaacacagtttgtgatacttgcttgttgggaaagcaacctagaagtgcattcagttcaagttcagcaagta |
30697291 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
30697292 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
30697338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 12020585 - 12020831
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
12020585 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
12020684 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | ||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
12020685 |
attctgggagtgcctaaaattgagatacctaacacagtctgtgatacttgcttgttgggaaagcaacctagaagtgcattcagttcaagttcagcaagta |
12020784 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
12020785 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
12020831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 40370108 - 40369862
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||| ||||| ||||||||| | ||| |
|
|
| T |
40370108 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaaccaattggttgataaagaaatg |
40370009 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
40370008 |
attctgggagtgcctaaaattgagatatctaacacagtttgtgatacttgcttgttgggaaagcaacctagaagtgcattcagttcaagttcagcaagta |
40369909 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
40369908 |
gatcaaaggagctacttaatgttgtatattcagatgtgtgtggtcct |
40369862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 37679332 - 37679578
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
37679332 |
tttatctgatatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
37679431 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | ||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
37679432 |
attctgggagtgcctaaaattgagatacctaacacagtctgtgatacttgcttgttgggaaagcaacctagaagtgcattcagttcaagttcagcaagta |
37679531 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
37679532 |
gattaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
37679578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7102235 - 7101989
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
7102235 |
tttatctgctatggtaaaagatgaagatagttggttatggcaatatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
7102136 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
7102135 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
7102036 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
7102035 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
7101989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 16795965 - 16796211
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
16795965 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
16796064 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
16796065 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
16796164 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
16796165 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
16796211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 10276320 - 10276566
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||| ||||| | ||| |
|
|
| T |
10276320 |
tttatctgctatgataaaagatgaagatagccggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggtttataaagaaatg |
10276419 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||||| |||| || ||| | ||||||| | || |||| |
|
|
| T |
10276420 |
attctgggagtgcctaaaattgagatatctaacacagtttgtgatacttgcttgttggggaagcaacctagaagtgcattaagttcaagttcagcaagta |
10276519 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
10276520 |
aatcaaagaagctgcttaatgttgtatattcagatgtgtgtggtcct |
10276566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 15065154 - 15065043
Alignment:
| Q |
17 |
aaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatgattctgggagtaccta |
116 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| |||||| |||| || | ||| || ||| |||||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
15065154 |
aaagaagaagatagttggttatggcactatatgtttggttatctcaattgtaggagtcttattcaattggttgataaagacatgattcttggagtaccta |
15065055 |
T |
|
| Q |
117 |
aaattgagatac |
128 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
15065054 |
aattggagatac |
15065043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 47726 - 47480
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
47726 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
47627 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | ||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
47626 |
attctgggagtgcctaaaattgagatacctaacacagtctgtgatacttgcttgttgggaaagcaacctagaagtgcattcagttcaagttcagcaagta |
47527 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
47526 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
47480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27187932 - 27188178
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
27187932 |
tttatctgctatggtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
27188031 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||||| |||| || ||||| ||||||| | | |||| |
|
|
| T |
27188032 |
attctgggagtacctaaaattgagatacctaacagagtttgtgatacttgcttgttgggcaagcaacctagaagtgcattcagttcaagtgcaacaagta |
27188131 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27188132 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
27188178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31356458 - 31356704
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| | ||||||| | ||| |
|
|
| T |
31356458 |
tttatctgctatggtaaaagataaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggatgataaagaaatg |
31356557 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||| || ||||| ||||||| | |||| |
|
|
| T |
31356558 |
attttgggagtacctaaaattgagatacctaacacactttgtgatacttgcttgttgggcaagcaacctagaagtgcattcagttcaagtgcaataagta |
31356657 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
31356658 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
31356704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 44148854 - 44149100
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
44148854 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
44148953 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
44148954 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
44149053 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
44149054 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
44149100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43682053 - 43681937
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
43682053 |
tttatttgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatcccaattttagaggtcttaatcaattggttgataaagaaatg |
43681954 |
T |
|
| Q |
101 |
attctgggagtacctaa |
117 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
43681953 |
attttgggagtacctaa |
43681937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9699375 - 9699621
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
9699375 |
tttatctgctatggtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
9699474 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||||| |||| || ||||| ||||||| | | |||| |
|
|
| T |
9699475 |
attctgggagtacctaaaattgagatacctaacagagtttgtgatacttgcttgttgggcaagcaacctagaagtgcattcagttcaagtgcaacaagta |
9699574 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
9699575 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
9699621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 54170205 - 54169959
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
54170205 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
54170106 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
54170105 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
54170006 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
54170005 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
54169959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43551588 - 43551834
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
43551588 |
tttatctgctatggttaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
43551687 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||| |||| || |||| ||||||| | || |||| |
|
|
| T |
43551688 |
attctaggagtacctaaaattgagatacctaacacagtttgttatacttgcttgttgggcaagcaacctagaagtgcgttcagttcaagtgcagcaagta |
43551787 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||| ||||||| |||| |||||| |||| |||| |
|
|
| T |
43551788 |
gatcaaaggagctgcttgatgttgtatatttagatgtgtgtggtcct |
43551834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21848919 - 21849037
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
21848919 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
21849018 |
T |
|
| Q |
101 |
attctgggagtacctaaaa |
119 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
21849019 |
attctgggagtgcctaaaa |
21849037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 22930147 - 22930051
Alignment:
| Q |
21 |
atgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatgattctgggagtacctaa |
117 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| |||||||| | | | || ||||||| |||||||| ||| | |||||| ||| ||||||||| |
|
|
| T |
22930147 |
atgaagatagctggctatggcactatatgtttggccatcttaattacataagtcttaatcatttagttgacaaagagatgattttggtagtacctaa |
22930051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 17889491 - 17889243
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagattt--ggtcatcttaaatttagaggttttaatcaattagttgataaatata |
98 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| |||||||||| ||||||||||| | |
|
|
| T |
17889491 |
tttatctgctatggtaaaagatgaagatagctggttatggcactatagatttttggtcatctcaattttagaggtcttaatcaattggttgataaataaa |
17889392 |
T |
|
| Q |
99 |
tgattctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctag |
198 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || || |
|
|
| T |
17889391 |
tgattctgagagtgcctaaaattgagatacctgacacagtttgtgatacttgcttgttggggaagcaacctagaagtgcattcagttcaagttcagcaag |
17889292 |
T |
|
| Q |
199 |
tagatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
17889291 |
tagatcaaaggagctacttaatgttgtatattcagatgtgtgtggtcct |
17889243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 8318365 - 8318119
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
8318365 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
8318266 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
8318265 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
8318166 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
8318165 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
8318119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 31927495 - 31927250
Alignment:
| Q |
2 |
ttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
31927495 |
ttatctgttatggtaaaagatgaagatagttggttatgacattataggtttggtcatctcaattttagaggtcttaatcaattagttgacaaagatatga |
31927396 |
T |
|
| Q |
102 |
ttctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagtag |
201 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| ||| ||||| | ||||| ||||||||||||||||| |||||| ||||| ||||||| ||||| ||| |
|
|
| T |
31927395 |
ttatgggagtacctaaaattgagatacttagtacattttgtaatacttgtttgttgggcaagcaacctagaaatacattcagttcaagtgttgctaatag |
31927296 |
T |
|
| Q |
202 |
atcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||||||| |||| |||| |
|
|
| T |
31927295 |
atcaaaagagttactcaatgttgtgttttcagatgtatgtggtcct |
31927250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 17161395 - 17161637
Alignment:
| Q |
5 |
tctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatgattc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||||||| |
|
|
| T |
17161395 |
tctgttatggtaaaagatgaagatagcttgctatgacattatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattc |
17161494 |
T |
|
| Q |
105 |
tgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagtagatc |
204 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| | |||||||||||||||||| |||| ||||| ||| ||| |||| ||||||| || |||||||| |
|
|
| T |
17161495 |
tgggagttcctaaaattgagatacctaacacagtctgtgacacttgcttgttgagcaaccaacctagacatgcattctgttcaagtggagcaagtagatc |
17161594 |
T |
|
| Q |
205 |
aaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
17161595 |
aaatgagctacttaatgttgtgcattcagatgtgtgtggtcct |
17161637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 27570593 - 27570346
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| | | ||||||||||| ||||||||||||||||| || ||||||||| ||||| |||| ||||||||| | ||| |
|
|
| T |
27570593 |
tttatctgctatggtaaaagatgaaggttgttggttatggcactatagatttggtcatctcaattttagaggtcttaataaattggttgataaagaaatg |
27570494 |
T |
|
| Q |
101 |
attctgggagtacctaaaattg-agatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagt |
199 |
Q |
| |
|
||| ||||||| ||||||| || ||||||||| |||| ||||||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || ||| |
|
|
| T |
27570493 |
attttgggagtgcctaaaaatggagatacctaacacagtttgtgatacttgcttgttggggaagcaacctagaagtgcattcagttcaagttcagcaagt |
27570394 |
T |
|
| Q |
200 |
agatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27570393 |
agatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
27570346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 15501046 - 15500823
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||| || ||| |||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
15501046 |
tttatctgctatagtgaaaaatgaagatagtttgttatggcactataggtttggtcatcttaattttagaggttttaatcaattagttgataaagaaatg |
15500947 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
|||| || ||||||||||||||||||||||| ||| ||| ||| || | ||||||||||| ||||||| ||| | ||| ||||| | || |
|
|
| T |
15500946 |
gttcttggtgtacctaaaattgagatacctagtacagtttatgatac--------taggcaagcaacctagaaatgcattaagttctagtacaacacata |
15500855 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattca |
232 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |
|
|
| T |
15500854 |
gatcaaaggagctattgaatgttgtgtattca |
15500823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 23255356 - 23255469
Alignment:
| Q |
17 |
aaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatgattctgggagtaccta |
116 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| ||||||| |||| || ||||| || |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
23255356 |
aaagaagaagataactggttatggcactataaatttggtgatctcaattttaggagtgttaatcaattggttgataaatatatgattctaggagtaccta |
23255455 |
T |
|
| Q |
117 |
aaattgagatacct |
130 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
23255456 |
aatttgagatacct |
23255469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35953293 - 35953052
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
35953293 |
tttatctgttatggtaaaagatgaagatattttgttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
35953194 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| | || || ||||| ||||||| | || |||| |
|
|
| T |
35953193 |
attctgggagtacctaaaattgagatacctaacacagtttgtgacatttgcttgttgggcaagcaacctataagtgaattcagttcaagtgcagcaagta |
35953094 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtg |
242 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||| |||| |
|
|
| T |
35953093 |
gatcaaaggagctgcttaatgttctatattcagatgtgtgtg |
35953052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8052688 - 8052934
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
8052688 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
8052787 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
8052788 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
8052887 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
8052888 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
8052934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 36672347 - 36672593
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
36672347 |
tttatctgcaatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
36672446 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
36672447 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
36672546 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
36672547 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
36672593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7942944 - 7942698
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
7942944 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
7942845 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
7942844 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
7942745 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
7942744 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
7942698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27758693 - 27758939
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
27758693 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
27758792 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | ||||| ||||| |||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
27758793 |
attctgggagttcctaaaattgagatacctaacacagtctgtgatacttgtttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
27758892 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27758893 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
27758939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 26313309 - 26313555
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
26313309 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
26313408 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
26313409 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
26313508 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
26313509 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
26313555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39795691 - 39795937
Alignment:
| Q |
1 |
tttatctgttatggtaaaagatgaagatagctggttatggcattatagatttggtcatcttaaatttagaggttttaatcaattagttgataaatatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
39795691 |
tttatctgctatggtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatg |
39795790 |
T |
|
| Q |
101 |
attctgggagtacctaaaattgagatacctagcacaatttgtgacacttgcttgttgggcaagcaacccagaaatgtattcaattcaagtactgctagta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| | |||| |||||||||||||| |||||||| |||| || ||||| ||||||| | || |||| |
|
|
| T |
39795791 |
attctgggagttcctaaaattgagatacctaacacagtctgtggtacttgcttgttgggaaagcaaccaagaagtgcattcagttcaagttcagcaagta |
39795890 |
T |
|
| Q |
201 |
gatcaaaggagctacttaatgttgtgtattcagatgtctgtgctcct |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
39795891 |
gatcaaaggagctgcttaatgttgtatattcagatgtgtgtggtcct |
39795937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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