View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0539_low_27 (Length: 248)

Name: NF0539_low_27
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0539_low_27
NF0539_low_27
[»] chr2 (3 HSPs)
chr2 (35-136)||(37363980-37364081)
chr2 (35-136)||(35600606-35600707)
chr2 (35-136)||(40656408-40656509)
[»] chr7 (2 HSPs)
chr7 (33-136)||(38702721-38702824)
chr7 (35-136)||(18334405-18334506)
[»] chr6 (4 HSPs)
chr6 (33-136)||(4443493-4443596)
chr6 (33-136)||(13512520-13512623)
chr6 (35-132)||(10082242-10082339)
chr6 (35-136)||(28694681-28694782)
[»] chr5 (2 HSPs)
chr5 (33-136)||(33886905-33887008)
chr5 (35-136)||(37567320-37567421)
[»] scaffold0164 (1 HSPs)
scaffold0164 (35-136)||(245-346)
[»] chr4 (1 HSPs)
chr4 (35-136)||(38965819-38965920)
[»] chr3 (2 HSPs)
chr3 (35-136)||(26249350-26249451)
chr3 (33-136)||(33901449-33901552)
[»] chr8 (1 HSPs)
chr8 (35-136)||(9764378-9764478)
[»] chr1 (1 HSPs)
chr1 (35-136)||(34676480-34676581)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 37363980 - 37364081
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  37363980 catcatcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactctg 37364079  T
Q  135 ct 136  Q
    ||    
T  37364080 ct 37364081  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 35600707 - 35600606
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  35600707 catcatcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 35600608  T
Q  135 ct 136  Q
    ||    
T  35600607 ct 35600606  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 40656509 - 40656408
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  40656509 catcatcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 40656410  T
Q  135 ct 136  Q
    ||    
T  40656409 ct 40656408  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 38702721 - 38702824
Alignment:
Q  33 gacatcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||    
T  38702721 gacatcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactc 38702820  T
Q  133 tgct 136  Q
    ||||    
T  38702821 tgct 38702824  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 18334405 - 18334506
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  18334405 catcatcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 18334504  T
Q  135 ct 136  Q
    ||    
T  18334505 ct 18334506  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 4443493 - 4443596
Alignment:
Q  33 gacatcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||    
T  4443493 gacatcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactc 4443592  T
Q  133 tgct 136  Q
    ||||    
T  4443593 tgct 4443596  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 13512623 - 13512520
Alignment:
Q  33 gacatcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||    
T  13512623 gacatcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactc 13512524  T
Q  133 tgct 136  Q
    ||||    
T  13512523 tgct 13512520  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 10082242 - 10082339
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  10082242 catcatcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactc 10082339  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 28694782 - 28694681
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  28694782 catcatcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 28694683  T
Q  135 ct 136  Q
    ||    
T  28694682 ct 28694681  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 33886905 - 33887008
Alignment:
Q  33 gacatcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||    
T  33886905 gacatcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactc 33887004  T
Q  133 tgct 136  Q
    ||||    
T  33887005 tgct 33887008  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 37567320 - 37567421
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  37567320 catcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 37567419  T
Q  135 ct 136  Q
    ||    
T  37567420 ct 37567421  T

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Target: scaffold0164 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 346 - 245
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  346 catcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 247  T
Q  135 ct 136  Q
    ||    
T  246 ct 245  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 38965819 - 38965920
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||    
T  38965819 catcatcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctg 38965918  T
Q  135 ct 136  Q
    ||    
T  38965919 ct 38965920  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 26249451 - 26249350
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | | |||||||||||||||    
T  26249451 catcatcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacaccctggaggagccctcacactctctcggcttccactctg 26249352  T
Q  135 ct 136  Q
    ||    
T  26249351 ct 26249350  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 33901449 - 33901552
Alignment:
Q  33 gacatcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactc 132  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||| | | ||||||||||||     
T  33901449 gacatcatcatcctcttcgccctcaccatacacttcataggggtcttccgcatcatcatcacacactagaggagccctcacactctctcggcttccacta 33901548  T
Q  133 tgct 136  Q
    ||||    
T  33901549 tgct 33901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 9764478 - 9764378
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||    
T  9764478 catcatcatcatcttcgcc-tcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttctactatg 9764380  T
Q  135 ct 136  Q
    ||    
T  9764379 ct 9764378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 34676480 - 34676581
Alignment:
Q  35 catcatcatcctcttcgccatcaccatacacttcataggggtcatccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctg 134  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||| || |||||||| | | |||||||||||||||    
T  34676480 catcatcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcagcacaaactggaggagccctcacactctctcggcttccactctg 34676579  T
Q  135 ct 136  Q
    ||    
T  34676580 ct 34676581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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