View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_5 (Length: 455)
Name: NF0539_low_5
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 188 - 434
Target Start/End: Original strand, 38444023 - 38444257
Alignment:
| Q |
188 |
gtctgatattgataagcagtacgtagccattagcaatttgaatttggttgataaatttcgtgtttgtattttaaattaacacataataaatgaaattaat |
287 |
Q |
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| T |
38444023 |
gtctgatattgatacgcagtacgtagccattagcaatttgaatttggttgataaattttgtgtttatattttaaattaacacataacaaatgaaatcaat |
38444122 |
T |
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| Q |
288 |
gcatgttatggaagtgaaatttctttaacaaatgaaccctaaagttgattatgagattaaaaaacctaaagccgttaataacttactatatattggagaa |
387 |
Q |
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| T |
38444123 |
gcatgttatggaagtgaaatttctttaacaaatgaaacctaaagtt--------gattaaaaaacctaaaacctttaataactta----ttattggagaa |
38444210 |
T |
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| Q |
388 |
aatatcatgtggtgtgatactgtcagcatatgtttcagaatttctat |
434 |
Q |
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| T |
38444211 |
aatgtcatgtggtgtgatactgtcagcatatgtttcagaatttctat |
38444257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 38443919 - 38444015
Alignment:
| Q |
30 |
aattgtatggattcaaatttattaatatattgattttttatcatggatttgtctcatatatttcttccacttaattatctctcctatatgttgttaa |
126 |
Q |
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| T |
38443919 |
aattgtatggattcaaatttattaatatattggttttttatcatggatctgtctcatatatttcttccacttaattatctctcctatatgttgttaa |
38444015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38170275 - 38170351
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38170275 |
aaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta |
38170351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38452635 - 38452559
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38452635 |
aaattgtacggattcaaattgattaatatattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38452559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 38220719 - 38220794
Alignment:
| Q |
30 |
aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38220719 |
aattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta |
38220794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38182326 - 38182250
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38182326 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38182250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38186062 - 38186138
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38186062 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38186138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38188805 - 38188881
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38188805 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38188881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38209552 - 38209476
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38209552 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38209476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38212295 - 38212219
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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|||||||| ||||||||||| ||||||| |||| || |||||||||||||||||||| |||||||||| |||||| |
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| T |
38212295 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38212219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38216030 - 38216106
Alignment:
| Q |
29 |
aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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| T |
38216030 |
aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta |
38216106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 38156540 - 38156636
Alignment:
| Q |
213 |
gccattagcaatttgaatttggttgataaatttcgtgtttgtattttaaattaacacataataaatgaaattaatgcatgttatggaagtgaaattt |
309 |
Q |
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| T |
38156540 |
gccattaacaatttaaatttggttaataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattt |
38156636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 38156397 - 38156435
Alignment:
| Q |
64 |
tttttatcatggatttgtctcatatatttcttccactta |
102 |
Q |
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||||||||||||||||||||| |||||||||| |||||| |
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| T |
38156397 |
tttttatcatggatttgtctcctatatttcttgcactta |
38156435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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