View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_7 (Length: 446)
Name: NF0539_low_7
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 47 - 414
Target Start/End: Original strand, 39691017 - 39691384
Alignment:
| Q |
47 |
gttgattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagag |
146 |
Q |
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| T |
39691017 |
gttgattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagag |
39691116 |
T |
|
| Q |
147 |
catcaatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattctta |
246 |
Q |
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| T |
39691117 |
catcaatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattctta |
39691216 |
T |
|
| Q |
247 |
gttgcctttgcttcttcttgtgttgctttgctggtaacctatatctatctaatctaaatctctatatttatattatgttaggtcgcatatgcaagcattt |
346 |
Q |
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| T |
39691217 |
gttgcctttgcttcttcttgtgttgctttgctggtaaactatatctatctaatctaaatctctatatttatattatgttaggttgcatatgcaagcattt |
39691316 |
T |
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| Q |
347 |
tgtcctgcttctctcactgttaaaataaatataatatgctccatttcctttgtttattttttagtact |
414 |
Q |
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| T |
39691317 |
tgtcctgcttctctcactgttaaaataaatataatatgctccatttcctttgtttcttttttagtact |
39691384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 54 - 283
Target Start/End: Original strand, 39700213 - 39700442
Alignment:
| Q |
54 |
aattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaat |
153 |
Q |
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| T |
39700213 |
aattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaat |
39700312 |
T |
|
| Q |
154 |
gcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcct |
253 |
Q |
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|||||||| |||||||||||||||||||||||| | | |||||| ||| | |||| |||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
39700313 |
gcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctgttgcct |
39700412 |
T |
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| Q |
254 |
ttgcttcttcttgtgttgctttgctggtaa |
283 |
Q |
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|| | |||||||||||||||||||||||| |
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| T |
39700413 |
ttacaacttcttgtgttgctttgctggtaa |
39700442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 39931190 - 39930980
Alignment:
| Q |
57 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
156 |
Q |
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||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |
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| T |
39931190 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
39931091 |
T |
|
| Q |
157 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
256 |
Q |
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|||| ||| ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| ||||||||||| || |||| |||||||||| |
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| T |
39931090 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
39930991 |
T |
|
| Q |
257 |
cttcttcttgt |
267 |
Q |
| |
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||||||||||| |
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|
| T |
39930990 |
cttcttcttgt |
39930980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 39935391 - 39935317
Alignment:
| Q |
113 |
ttgtatatcttataagtgaattcaatatcaagagcatcaatgcagctcagattgtaaacgttgttgttggaagca |
187 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||| | ||||||| |
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| T |
39935391 |
ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagca |
39935317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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