View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0539_low_8 (Length: 440)
Name: NF0539_low_8
Description: NF0539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0539_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Complemental strand, 35367990 - 35367580
Alignment:
| Q |
6 |
agtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgc |
105 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| | |
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| T |
35367990 |
agtgacctctgtgtcacatctataatcatagagagattgagagaacagttagagcgacacagaggacaattggggtttttacgaagccaaacctcaatac |
35367891 |
T |
|
| Q |
106 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacactcacacgtagattcttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35367890 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacattcacacgtagattcttc |
35367791 |
T |
|
| Q |
206 |
ttgtgcataccgagccgtgtagatggaaacgaggatggtgtttataaccgtcttgtctaagttgtggacgacgtgtgtctgcccagccacggcgtgcgtc |
305 |
Q |
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| T |
35367790 |
ttgtgcatactgagccgtgtagatggaaacgaggatggtgtttataatcgtcttgtctaagttgtggacgacgtgcgtctgcccagccacgacgtgcgcc |
35367691 |
T |
|
| Q |
306 |
tgcccgtcaaaataaaagatgaggaaatacaacacaaccgatgctatgaggaccatggcaaaataatagaaaggactcatcactaatgaagatgggggcg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35367690 |
tgcccgtcaaaataaaagatgaggaaatacaacacaaccgatgctatgaggaccatggcaaaataatagaaaggactcatcactaatgaagatgggggcg |
35367591 |
T |
|
| Q |
406 |
tgagtgtgatg |
416 |
Q |
| |
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| T |
35367590 |
tgagtgtgatg |
35367580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 35374931 - 35374654
Alignment:
| Q |
6 |
agtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgc |
105 |
Q |
| |
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||||| ||||| | |||||||||||| |||||| |||||||| ||| | |||||||| | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
35374931 |
agtgatctctccggcacatctataattatagagtgattgagatgacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgc |
35374832 |
T |
|
| Q |
106 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacactcacacgtagattcttc |
205 |
Q |
| |
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| |||||||| || |||| |||||| || ||| ||||||| | || |||||||||||| ||||| || ||||| | ||| |||| ||||||||| |
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| T |
35374831 |
attcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttc |
35374732 |
T |
|
| Q |
206 |
ttgtgcataccgagccgtgtagatggaaacgaggatggtgtttataaccgtcttgtctaagttgtggacgacgtgtgt |
283 |
Q |
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| T |
35374731 |
gtttgcatacttagcagtgtagacagagaaggggatggtgtttctgaccaactcgtctaagttgtggacgacatgtgt |
35374654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 35356921 - 35356787
Alignment:
| Q |
57 |
gagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcat |
156 |
Q |
| |
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|||||||| | |||||||||||| | |||| |||||||||| ||||||||| ||||||| || ||||| |||||| || ||| || | || | ||||| |
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| T |
35356921 |
gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcat |
35356822 |
T |
|
| Q |
157 |
tgtcttcaaattcatctaaacaaatgatacactca |
191 |
Q |
| |
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||| |||||||||| | || |||||| | |||||| |
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| T |
35356821 |
tgttttcaaattcaaccaagcaaatggtgcactca |
35356787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 10696826 - 10696703
Alignment:
| Q |
57 |
gagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcat |
156 |
Q |
| |
|
|||||||| | |||||| ||||| | ||||| |||||| || ||||||||| ||||||| || ||||| |||||| || ||||| | || |||||||| |
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| T |
10696826 |
gagcgacaaataggacagttaggttgtttactaagccatgcttcaatgcaaacgagatggaaagtgtgggaacaaagaggcagggtgcgaatgcgatcat |
10696727 |
T |
|
| Q |
157 |
tgtcttcaaattcatctaaacaaa |
180 |
Q |
| |
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|||||| ||||||||| ||||||| |
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| T |
10696726 |
tgtctttaaattcatccaaacaaa |
10696703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 30812120 - 30812018
Alignment:
| Q |
14 |
ctctgtcacatctataatcatagagggattgagaga-acagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgag |
112 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||| ||| | |||||| | | ||| || ||||| ||||||||||| ||||| |||||||||| ||| |
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| T |
30812120 |
ctctgtcacatctataattacagagtgattgagagagacatgttgagcgatagagagggcagttaggttttttacgaagtcaagcttcaatgcaattgag |
30812021 |
T |
|
| Q |
113 |
atg |
115 |
Q |
| |
|
||| |
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|
| T |
30812020 |
atg |
30812018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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