View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_high_3 (Length: 398)
Name: NF0540_high_3
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 27 - 397
Target Start/End: Complemental strand, 50593988 - 50593617
Alignment:
| Q |
27 |
aaatatggaactaaaagtgaagtgtgtagtatgaaaccaacaagatcatcaa-gtcattggtagttactaaatgcatggtgaccacattcatgagctatc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50593988 |
aaatatggaactaaaagtgaagtgtgtagtatgaaaccaacaagatcatcaaagccattggtagttactaaatgcatggtgaccacattcatgagctatc |
50593889 |
T |
|
| Q |
126 |
acccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaa |
225 |
Q |
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| T |
50593888 |
acccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaa |
50593789 |
T |
|
| Q |
226 |
tgtagagaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgcggtggaatggatttcttcaactg |
325 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50593788 |
tgtagagaacatatgctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgtggtggaatggatttcttcaactg |
50593689 |
T |
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| Q |
326 |
accaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggcc |
397 |
Q |
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| T |
50593688 |
accaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggcc |
50593617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 383
Target Start/End: Complemental strand, 1897023 - 1896773
Alignment:
| Q |
132 |
acaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaatgtaga |
231 |
Q |
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| T |
1897023 |
acaccagtgagaatgcaaccttggagaagttaataaataggctaaaggatgaagggaaaaaggcgagggatggagtggaagtatgtagtgcaaatgtaga |
1896924 |
T |
|
| Q |
232 |
gaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgcggtggaatggatttcttcaactgaccaac |
331 |
Q |
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||| || ||||| ||| || ||||| || ||| ||||| | || || || |||| || ||| ||| ||||||||||||||||||||| | ||||| |
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| T |
1896923 |
gaaagaagcctattcaaaagtaaaaaataacatagaagaattagaatagaatagaacattaaaaa-aatatggtggaatggatttcttcaaccggccaac |
1896825 |
T |
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| Q |
332 |
tgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagag |
383 |
Q |
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| T |
1896824 |
tgtgaattgtggctttatgcgtggaacccttgagagatgattgagtttagag |
1896773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 23031155 - 23031080
Alignment:
| Q |
81 |
cattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
156 |
Q |
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| T |
23031155 |
cattgataattactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgcatccttgga |
23031080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 37019998 - 37019913
Alignment:
| Q |
71 |
atcatcaagtcattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
156 |
Q |
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||||||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || |||||||||||||| || ||||||||||||| |
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| T |
37019998 |
atcatcaagccattgatagtcactgaatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaaccttgga |
37019913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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