View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0540_high_8 (Length: 222)
Name: NF0540_high_8
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_high_8 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6789040 - 6788903
Alignment:
| Q |
1 |
acaacaaagtggcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcagaaaaggctacatgacgtcctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6789040 |
acaacaaagtggcatgtcattcaattttttatgacttcttcttaacaattaaaaagagaaataaaacgaaaatcgcagaaaaggctacatgacgtcctca |
6788941 |
T |
|
| Q |
101 |
ctatgtaattgtttgattcaagtaattc-attggcttc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6788940 |
ctatgtaattgtttgattcaagtaattcaattggcttc |
6788903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6526980 - 6526849
Alignment:
| Q |
1 |
acaacaaagtggcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcag-aaaaggctacatgacgtcctc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||| |||||| | | ||||||| ||||||| ||||| |
|
|
| T |
6526980 |
acaacaaagtggcatgtcattcaattttttatcactt------aacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctc |
6526887 |
T |
|
| Q |
100 |
actatgtaattgtttgattcaagtaattcattggcttc |
137 |
Q |
| |
|
|| ||||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
6526886 |
accatgtaattggttgatgcaattaattcatcggcttc |
6526849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 6939253 - 6939359
Alignment:
| Q |
12 |
gcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcag-aaaaggctacatgacgtcctcactatgtaatt |
110 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| |||||||||| ||||| || || ||||||| ||||||| ||||||| ||||||| |
|
|
| T |
6939253 |
gcatgtcattcaatttttgatcacttcttcttaacacttaaaaaaagaaataaaatgaaaactggagtaaaaggccacatgacatcctcaccgtgtaatt |
6939352 |
T |
|
| Q |
111 |
gtttgat |
117 |
Q |
| |
|
| ||||| |
|
|
| T |
6939353 |
gattgat |
6939359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6558223 - 6558093
Alignment:
| Q |
1 |
acaacaaagtggcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcag-aaaaggctacatgacgtcctc |
99 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |||||||||||| | |||||||| |||||| | | ||||||| ||||||| ||||| |
|
|
| T |
6558223 |
acaacaaggtggcatgtcattcaattttttatcactt------aacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctc |
6558130 |
T |
|
| Q |
100 |
actatgtaattgtttgattcaagtaattcattggctt |
136 |
Q |
| |
|
|| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
6558129 |
accatgtaatttgttgatgcaagtaattcatcggctt |
6558093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6848561 - 6848429
Alignment:
| Q |
1 |
acaacaaagtggcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcag-aaaaggctacatgacgtcctc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| |||||| | | ||||||| ||||| | ||||| |
|
|
| T |
6848561 |
acaacaaagtggcatgtcattcaatttttt-----tatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatggcatcctc |
6848467 |
T |
|
| Q |
100 |
actatgtaattgtttgattcaagtaattcattggcttc |
137 |
Q |
| |
|
|| ||||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
6848466 |
accatgtaattggttgatgcaattaattcatcggcttc |
6848429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 11687 - 11556
Alignment:
| Q |
1 |
acaacaaagtggcatgtcattcaattttttacgacttcttcttaacaattaaaaagagaaataaaacgaaaattgcag-aaaaggctacatgacgtcctc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||| |||||| | | ||||||| ||||||| ||||| |
|
|
| T |
11687 |
acaacaaagtggcatgtcattcaattttttatcactt------aacaattaaaaatattaataaaatgaaaatcacggtaaaaggccacatgacatcctc |
11594 |
T |
|
| Q |
100 |
actatgtaattgtttgattcaagtaattcattggcttc |
137 |
Q |
| |
|
|| ||||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
11593 |
accatgtaattggttgatgcaattaattcatcggcttc |
11556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1244 times since January 2019
Visitors: 3642