View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_1 (Length: 761)
Name: NF0540_low_1
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 407 - 732
Target Start/End: Original strand, 54713732 - 54714057
Alignment:
| Q |
407 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
506 |
Q |
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| T |
54713732 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
54713831 |
T |
|
| Q |
507 |
taacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt |
606 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713832 |
taacgatgaacgcaaacaattgccgtaacgttctatattggaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt |
54713931 |
T |
|
| Q |
607 |
caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcactttttagccagtctttctatcatgcaactattaactggtcaattaattaacca |
706 |
Q |
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| T |
54713932 |
caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcattttttagccagtctttctatcatgcaactattaactggtcaattaattaacca |
54714031 |
T |
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| Q |
707 |
tcatatttaacgccatgcatgcttcc |
732 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54714032 |
tcatatttaacgccatgcatgcttcc |
54714057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 76 - 341
Target Start/End: Original strand, 54713192 - 54713461
Alignment:
| Q |
76 |
gagatgaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagagaaga |
175 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54713192 |
gagaagaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatgtatggtggtggggagagagaaga |
54713291 |
T |
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| Q |
176 |
gatccgtttttagagaagctgagggttgggacttaa-----nnnnnnnnngtcttcttttatgagatggcac-tttcataagattattttata-tatttt |
268 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||| |
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| T |
54713292 |
gatccgtttttagagaagatgagggttgggacttaattttttttttttttgtcttcttttatgagatggcacttttcataagattattttatattttttt |
54713391 |
T |
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| Q |
269 |
ttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactcgaaaaat |
341 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||| |||||| |
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| T |
54713392 |
ttagacacgtggaaggtgtacaaagagtggtagccacatagggtg---gttcatgtataatcactcaaaaaat |
54713461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 504 - 611
Target Start/End: Original strand, 54680135 - 54680242
Alignment:
| Q |
504 |
atataacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggct |
603 |
Q |
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| T |
54680135 |
atataacgatgaacccaaacaattgccgtaaagttctatattggaattctacgttgatgttgtaactgattttgtatttgttagccggtcttcattggct |
54680234 |
T |
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| Q |
604 |
cttcaaaa |
611 |
Q |
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|||||||| |
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| T |
54680235 |
cttcaaaa |
54680242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 407 - 504
Target Start/End: Original strand, 54679876 - 54679973
Alignment:
| Q |
407 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
54679876 |
tttgattggtagatatgatttaacacatcagatgttgagtacaacatagtaaaattgacccttcatctagcattgtagtattaatgtaataaatttaa |
54679973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 54713475 - 54713517
Alignment:
| Q |
337 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
379 |
Q |
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| T |
54713475 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
54713517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 688 - 732
Target Start/End: Original strand, 54720933 - 54720977
Alignment:
| Q |
688 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcc |
732 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54720933 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcc |
54720977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 690 - 724
Target Start/End: Original strand, 54680297 - 54680331
Alignment:
| Q |
690 |
ggtcaattaattaaccatcatatttaacgccatgc |
724 |
Q |
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| T |
54680297 |
ggtcaattaattaaccatcatatttaacgccatgc |
54680331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 54679839 - 54679886
Alignment:
| Q |
337 |
aaaattgttgcaatatttataaactagatttcaacccttttgattggta |
385 |
Q |
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|||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
54679839 |
aaaattattgcaatttttataaactagatttcaa-ccttttgattggta |
54679886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 81 - 334
Target Start/End: Complemental strand, 32971968 - 32971718
Alignment:
| Q |
81 |
gaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagagaa--gagat |
178 |
Q |
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||||||||||||||||||||||||||||||| |||| || | || |||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||| |
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| T |
32971968 |
gaaagagagagttgagttgttgaaatcggagttggggcggaggggtggtcggagtttgcggcggtggcagtggatggcggttgggagagagaagagagat |
32971869 |
T |
|
| Q |
179 |
ccgtttttagagaagctgagggttgggacttaannnnnnnnngtcttcttttatgagatggcactttcataagattattttatatattttttagacatgt |
278 |
Q |
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| T |
32971868 |
ctgtttttagagaagc-aagggttgggacttaatttttttttgtcttcttttatgagctggcactttcataagatta-tttatatttttcttagacatgt |
32971771 |
T |
|
| Q |
279 |
ggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactc |
334 |
Q |
| |
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| |||||||||||||||||||||||| ||| | || |||||||||||||||||| |
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| T |
32971770 |
gaaaggtgtacaaagagtggtagccacataggatg---gttcatgtataaccactc |
32971718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 76 - 334
Target Start/End: Original strand, 41664990 - 41665254
Alignment:
| Q |
76 |
gagatgaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagaga-ag |
174 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| || | || ||||||||||||||||| ||||| ||||||| |||||||||||| | || |
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| T |
41664990 |
gagaagaaagagagagttgagttgttgaaatcggagctggggcggaggggtggtcggagtttgcggcagtggcagtggatggcggtggggagagaaagag |
41665089 |
T |
|
| Q |
175 |
agatccgtttttagagaagctgagggttgggactta-------annnnnnnnngtcttcttttatgagatggcactttcataagattattttata-tatt |
266 |
Q |
| |
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||||| |||||||||||||| ||||||| ||||||| | ||||||||||||||| || ||||||||||||||||||||||| | || |
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| T |
41665090 |
agatctgtttttagagaagcggagggttaggacttaattttttatttttttttgtcttcttttatgagctgacactttcataagattattttatattttt |
41665189 |
T |
|
| Q |
267 |
ttttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactc |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| |
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|
| T |
41665190 |
ttttagacatgtggaaggtgtacaaagagtggtagccacataggatg---gttcatgtataaccactc |
41665254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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