View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_12 (Length: 288)
Name: NF0540_low_12
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_12 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 12642 - 12366
Alignment:
| Q |
1 |
tgttgaaaaataaggaatgaagattgcatcatgtttttaataccactttctagttttatgttggtgaatataattttgatgaaggtacaaatattactaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12642 |
tgttgaaaaataaggaatgaagattgcatcatgtgtttaataccactttctagttttatgttagtgaatataattttgatgaaggtacaaatattactaa |
12543 |
T |
|
| Q |
101 |
ccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatcaggctttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12542 |
ccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacaagtcatcaggctttgat |
12443 |
T |
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| Q |
201 |
gcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttct |
277 |
Q |
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| T |
12442 |
gcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttct |
12366 |
T |
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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 33975600 - 33975484
Alignment:
| Q |
92 |
tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca |
191 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||| || ||||| |||||||| ||||||| |
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| T |
33975600 |
tattactaaccagttgataccgacaatatacgggcagcaagctgttgaggattttgtttaacacacaatctcataaactttgaaaatatacgggtcatca |
33975501 |
T |
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| Q |
192 |
ggctttgatgcttctcc |
208 |
Q |
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|| ||| ||||||||| |
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| T |
33975500 |
agccttgctgcttctcc |
33975484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 33952994 - 33952878
Alignment:
| Q |
92 |
tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca |
191 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||| ||||||||| |||| |||||||||||||| ||| || ||||||||||||| ||||||| |
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| T |
33952994 |
tattactaaccagctgataccgacaatatacgggcagtgagctgttgaggattccgtttaacacacaatctcataaactttgacaatatacaggtcatca |
33952895 |
T |
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| Q |
192 |
ggctttgatgcttctcc |
208 |
Q |
| |
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|| ||| ||||||||| |
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| T |
33952894 |
agccttgctgcttctcc |
33952878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 33960300 - 33960184
Alignment:
| Q |
92 |
tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca |
191 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||||||||| |||| |||||||||||||| ||| || ||||||||||||| ||||||| |
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| T |
33960300 |
tattactaaccagctgataccgacaatatacgggcagtgagctgttgaggattccgtttaacacacaatctcataaactttgacaatatacaggtcatca |
33960201 |
T |
|
| Q |
192 |
ggctttgatgcttctcc |
208 |
Q |
| |
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|| ||| ||||||||| |
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| T |
33960200 |
agccttgctgcttctcc |
33960184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 33992513 - 33992397
Alignment:
| Q |
92 |
tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||| |||||||| |||||||||||| ||||||| ||| | ||||||||||||||| |||| || |
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| T |
33992513 |
tattactaaccagttgataccgacaatatgtgagcagcaagctgttggggattttgtttaatacacaatctcattacttttgacaatatacgggtcaaca |
33992414 |
T |
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| Q |
192 |
ggctttgatgcttctcc |
208 |
Q |
| |
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|||||| ||||||||| |
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| T |
33992413 |
agctttgctgcttctcc |
33992397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 8277762 - 8277878
Alignment:
| Q |
92 |
tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca |
191 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||| ||| || |||||||||||||| ||||||| |
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| T |
8277762 |
tattactaaccagttgataccgacaatatacgggcagcgaaatgttgaggattttgtttaacacaaaatctcataaactttgacaatatacgggtcatca |
8277861 |
T |
|
| Q |
192 |
ggctttgatgcttctcc |
208 |
Q |
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| ||| ||||||||| |
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| T |
8277862 |
aaccttgctgcttctcc |
8277878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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