View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_13 (Length: 276)
Name: NF0540_low_13
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 69 - 267
Target Start/End: Complemental strand, 5793456 - 5793260
Alignment:
| Q |
69 |
cagttctgatgatccatgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatc |
168 |
Q |
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| T |
5793456 |
cagttctgctgatccctgttatgttgctactgtttttgtcagttttgctattagttggcttagatgctgctttgtgttcgttgttgtgtaaattaatatc |
5793357 |
T |
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| Q |
169 |
agtttagctgaggccatcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagctctctgc |
267 |
Q |
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| T |
5793356 |
attttagctgaggccgtcttatggc--tgtcggtttcagtgagtttcgcctatatatggcggctgttgttttgtatttcatttgtggctagctctctgc |
5793260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 85 - 261
Target Start/End: Complemental strand, 5670222 - 5670046
Alignment:
| Q |
85 |
tgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggcca |
184 |
Q |
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| T |
5670222 |
tgttatgtcgcggctgtttttgtcagttttgctattagttggctgagatgctgctttgtgttggtggttgtgtttatttttatcagtttagccgaggctg |
5670123 |
T |
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| Q |
185 |
tcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagct |
261 |
Q |
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| T |
5670122 |
tcttatggttgtgttggtttctgtttgttccgtctttatacggcgcgcgttgttttgtatttcatctgtggctagct |
5670046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 261
Target Start/End: Complemental strand, 5693893 - 5693717
Alignment:
| Q |
85 |
tgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggcca |
184 |
Q |
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| T |
5693893 |
tgttatgacgcggctgtttttgtcagttttgctattagttggctgagatgctgctctgtgttggtggttgtgtttatttttatcagtttagccgaggctg |
5693794 |
T |
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| Q |
185 |
tcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagct |
261 |
Q |
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| T |
5693793 |
tcttatggttgtgttggtttctgtttgttccgtctttatacggcgcgcgttgttttgtatttcatctgtggctagct |
5693717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 263
Target Start/End: Complemental strand, 5679692 - 5679531
Alignment:
| Q |
102 |
ttttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggccatcttatggctgtgttgg |
201 |
Q |
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| T |
5679692 |
ttttgtcatttttgctattagttggctgagatgctgctttgtgttggtggttgtgtttatttttaacagtttagccgaggctgtcttatggttgtgttgg |
5679593 |
T |
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| Q |
202 |
tttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagctct |
263 |
Q |
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| T |
5679592 |
tttctgtttgttccgtctatatacggtgtccgttgttttgtatttcatctgtagctagctct |
5679531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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