View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_14 (Length: 259)
Name: NF0540_low_14
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 1488943 - 1489158
Alignment:
| Q |
29 |
atgcagccgtatctccgcaagcagagaagttcatgcgcgaaagctcattctcatcaacattgcaacaaaataataagagaaaataaaaagaagctacctt |
128 |
Q |
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| T |
1488943 |
atgcagccgtatctccgcaagcagagaagttcatgcacgaaagctcattctcatcaacattgcaacaaaataataagataaaataaaaagaagctacctt |
1489042 |
T |
|
| Q |
129 |
gttttccaaaagattatcccaagctctgccattcagaacatatcagactacaaattttaataaat-aagagggatatatgttaccaaactatacaaccaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1489043 |
gttttccaaaagattatcccaagctctgccattcagaacatatcagactacaaattttaataaatcaagagggatatatgttaccaaactatacaaccaa |
1489142 |
T |
|
| Q |
228 |
attatgccggccgaac |
243 |
Q |
| |
|
|||||||||| ||||| |
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| T |
1489143 |
attatgccggtcgaac |
1489158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 1491615 - 1491578
Alignment:
| Q |
194 |
aagagggatatatgttaccaaactatacaaccaaatta |
231 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |
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| T |
1491615 |
aagagggatataggttatcaaactatacaaccaaatta |
1491578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 26791689 - 26791652
Alignment:
| Q |
194 |
aagagggatatatgttaccaaactatacaaccaaatta |
231 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
26791689 |
aagagggatataggttaccaaactgtacaaccaaatta |
26791652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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