View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_17 (Length: 239)
Name: NF0540_low_17
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 7814775 - 7814896
Alignment:
| Q |
32 |
tactcatttcagaatcataattgggatcaagtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtat |
131 |
Q |
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| T |
7814775 |
tactcatttcataatcataattgggatcaagtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggttttctgagtagtat |
7814874 |
T |
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| Q |
132 |
gtttgattgcttgcttgttctt |
153 |
Q |
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|||| ||| |||||||||||| |
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| T |
7814875 |
atttgtttgtttgcttgttctt |
7814896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 3255213 - 3255106
Alignment:
| Q |
46 |
tcataattgggatcaagtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttgc |
145 |
Q |
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||||||||||||| |||||| |||| ||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||| ||| |
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| T |
3255213 |
tcataattgggattgtgtagtagaacttctccgccattctcccaatcttcaaattctttttattaaaaaggtttgttgagtagtacatttgtttgtttgt |
3255114 |
T |
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| Q |
146 |
ttgttctt |
153 |
Q |
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|||||||| |
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| T |
3255113 |
ttgttctt |
3255106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 14435875 - 14435811
Alignment:
| Q |
80 |
cattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttg |
144 |
Q |
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| T |
14435875 |
cattgtcccatgcttcaaattcttttcattaaaaaggtttgctgagtaatatatttgtttgcttg |
14435811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 7806118 - 7806063
Alignment:
| Q |
62 |
gtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggt |
117 |
Q |
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| T |
7806118 |
gtagtaaaactgctccgccattgtcccaagcttcaaattcttttcattaaaaaggt |
7806063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 7872059 - 7872116
Alignment:
| Q |
72 |
tgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagt |
129 |
Q |
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| T |
7872059 |
tgctccgccattgtcccaagcttcaaattcttattattaaaaaggtatgttgagtagt |
7872116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 14438536 - 14438480
Alignment:
| Q |
80 |
cattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttg |
136 |
Q |
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| T |
14438536 |
cattgtcccaagcttcaaattctttatattaataaggtttgttgagtaatatatttg |
14438480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 37996874 - 37996808
Alignment:
| Q |
87 |
ccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttgcttgttctt |
153 |
Q |
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| T |
37996874 |
ccaagcttcaaattctttctattagaaaggtttgttgagtagtatgtttgtttgtttgctagttctt |
37996808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 2467824 - 2467742
Alignment:
| Q |
62 |
gtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttg |
144 |
Q |
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| T |
2467824 |
gtagtagaactgctctgccactgtcgcaagcttcaaattgtttttattagaaaggtttgttgagtaatatatttgtttgcttg |
2467742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 14018469 - 14018530
Alignment:
| Q |
69 |
aactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagta |
130 |
Q |
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|||||||| |||||||||| | ||| |||||||||| |||||||||||||| ||||||||| |
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| T |
14018469 |
aactgctccgccattctccaaggctccaaattctttttattaaaaaggtttgttgagtagta |
14018530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 22620965 - 22621003
Alignment:
| Q |
80 |
cattctcccaagcttcaaattctttcaattaaaaaggtt |
118 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |
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| T |
22620965 |
cattctcccaagcttcaaattcttttaattagaaaggtt |
22621003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 24005239 - 24005178
Alignment:
| Q |
85 |
tcccaagcttcaaattctttcaattaaaaaggtttgct--gagtagtatgtttgattgcttg |
144 |
Q |
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|||||||||||||||||||| |||| ||||||||| | |||||||||||||| ||||||| |
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|
| T |
24005239 |
tcccaagcttcaaattctttttattagaaaggtttgttgagagtagtatgtttgtttgcttg |
24005178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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