View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0540_low_4 (Length: 600)

Name: NF0540_low_4
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0540_low_4
NF0540_low_4
[»] chr3 (8 HSPs)
chr3 (246-571)||(54713732-54714057)
chr3 (343-450)||(54680135-54680242)
chr3 (246-343)||(54679876-54679973)
chr3 (12-180)||(54713289-54713461)
chr3 (176-218)||(54713475-54713517)
chr3 (527-571)||(54720933-54720977)
chr3 (529-563)||(54680297-54680331)
chr3 (176-224)||(54679839-54679886)
[»] chr5 (1 HSPs)
chr5 (12-173)||(32971718-32971874)
[»] chr1 (1 HSPs)
chr1 (60-173)||(41665143-41665254)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 246 - 571
Target Start/End: Original strand, 54713732 - 54714057
Alignment:
Q  246 tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54713732 tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata 54713831  T
Q  346 taacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt 445  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54713832 taacgatgaacgcaaacaattgccgtaacgttctatattggaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt 54713931  T
Q  446 caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcactttttagccagtctttctatcatgcaactattaactggtcaattaattaacca 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54713932 caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcattttttagccagtctttctatcatgcaactattaactggtcaattaattaacca 54714031  T
Q  546 tcatatttaacgccatgcatgcttcc 571  Q
    ||||||||||||||||||||||||||    
T  54714032 tcatatttaacgccatgcatgcttcc 54714057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 343 - 450
Target Start/End: Original strand, 54680135 - 54680242
Alignment:
Q  343 atataacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggct 442  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||| |||||||||||||||||  |||||||||||||    
T  54680135 atataacgatgaacccaaacaattgccgtaaagttctatattggaattctacgttgatgttgtaactgattttgtatttgttagccggtcttcattggct 54680234  T
Q  443 cttcaaaa 450  Q
    ||||||||    
T  54680235 cttcaaaa 54680242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 54679876 - 54679973
Alignment:
Q  246 tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaa 343  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||||    
T  54679876 tttgattggtagatatgatttaacacatcagatgttgagtacaacatagtaaaattgacccttcatctagcattgtagtattaatgtaataaatttaa 54679973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 54713289 - 54713461
Alignment:
Q  12 agagatccgtttttagagaagctgagggttgggacttaannnnnnnnn-----gtcttcttttatgagatggcacttt-cataagattattttatatatt 105  Q
    ||||||||||||||||||||| |||||||||||||||||              ||||||||||||||||||||||||| |||||||||||||||||| ||    
T  54713289 agagatccgtttttagagaagatgagggttgggacttaattttttttttttttgtcttcttttatgagatggcacttttcataagattattttatatttt 54713388  T
Q  106 tt-ttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactcgaaaaat 180  Q
    || ||||||| |||||||||||||||||||||||||||| ||| ||||   |||||||||||| ||||| ||||||    
T  54713389 tttttagacacgtggaaggtgtacaaagagtggtagccacatagggtg---gttcatgtataatcactcaaaaaat 54713461  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 54713475 - 54713517
Alignment:
Q  176 aaaattgttgcaatatttataaactagatttcaacccttttga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54713475 aaaattgttgcaatatttataaactagatttcaacccttttga 54713517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 571
Target Start/End: Original strand, 54720933 - 54720977
Alignment:
Q  527 ctggtcaattaattaaccatcatatttaacgccatgcatgcttcc 571  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  54720933 ctggtccattaattaaccatcatatttaacgccatgcatgcttcc 54720977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 54680297 - 54680331
Alignment:
Q  529 ggtcaattaattaaccatcatatttaacgccatgc 563  Q
    |||||||||||||||||||||||||||||||||||    
T  54680297 ggtcaattaattaaccatcatatttaacgccatgc 54680331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 54679839 - 54679886
Alignment:
Q  176 aaaattgttgcaatatttataaactagatttcaacccttttgattggta 224  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  54679839 aaaattattgcaatttttataaactagatttcaa-ccttttgattggta 54679886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 32971874 - 32971718
Alignment:
Q  12 agagatccgtttttagagaagctgagggttgggacttaannnnnnnnngtcttcttttatgagatggcactttcataagattattttatatattttttag 111  Q
    ||||||| ||||||||||||||  |||||||||||||||         ||||||||||||||| |||||||||||||||||||||| |||| ||| ||||    
T  32971874 agagatctgtttttagagaagca-agggttgggacttaatttttttttgtcttcttttatgagctggcactttcataagattattt-atatttttcttag 32971777  T
Q  112 acatgtggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactc 173  Q
    ||||||| |||||||||||||||||||||||| ||| | ||   ||||||||||||||||||    
T  32971776 acatgtgaaaggtgtacaaagagtggtagccacataggatg---gttcatgtataaccactc 32971718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 41665143 - 41665254
Alignment:
Q  60 gtcttcttttatgagatggcactttcataagattattttatatatttt-ttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgtt 158  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | ||   |||    
T  41665143 gtcttcttttatgagctgacactttcataagattattttatatttttttttagacatgtggaaggtgtacaaagagtggtagccacataggatg---gtt 41665239  T
Q  159 catgtataaccactc 173  Q
    |||||||||||||||    
T  41665240 catgtataaccactc 41665254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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