View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_5 (Length: 599)
Name: NF0540_low_5
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 245 - 570
Target Start/End: Original strand, 54713732 - 54714057
Alignment:
| Q |
245 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
344 |
Q |
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| T |
54713732 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
54713831 |
T |
|
| Q |
345 |
taacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt |
444 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713832 |
taacgatgaacgcaaacaattgccgtaacgttctatattggaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggctctt |
54713931 |
T |
|
| Q |
445 |
caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcactttttagccagtctttctatcatgcaactattaactggtcaattaattaacca |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713932 |
caaaagtgaagacaaatgcagaatcattcgctcttcaaaagtttcattttttagccagtctttctatcatgcaactattaactggtcaattaattaacca |
54714031 |
T |
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| Q |
545 |
tcatatttaacgccatgcatgcttcc |
570 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54714032 |
tcatatttaacgccatgcatgcttcc |
54714057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 342 - 449
Target Start/End: Original strand, 54680135 - 54680242
Alignment:
| Q |
342 |
atataacgatgaacccaaacaattgccgtaacgttctatatttgaattcttcattgatgttgtaactaattttgtatttgttagcaagtcttcattggct |
441 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
54680135 |
atataacgatgaacccaaacaattgccgtaaagttctatattggaattctacgttgatgttgtaactgattttgtatttgttagccggtcttcattggct |
54680234 |
T |
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| Q |
442 |
cttcaaaa |
449 |
Q |
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|||||||| |
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| T |
54680235 |
cttcaaaa |
54680242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 54679876 - 54679973
Alignment:
| Q |
245 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
54679876 |
tttgattggtagatatgatttaacacatcagatgttgagtacaacatagtaaaattgacccttcatctagcattgtagtattaatgtaataaatttaa |
54679973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 54713289 - 54713461
Alignment:
| Q |
12 |
agagatccgtttttagagaagctgagggttgggacttaannnnnnnn------gtcttcttttatgagatggcacttt-cataagattattttatatatt |
104 |
Q |
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| T |
54713289 |
agagatccgtttttagagaagatgagggttgggacttaattttttttttttttgtcttcttttatgagatggcacttttcataagattattttatatttt |
54713388 |
T |
|
| Q |
105 |
tt-ttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgttcatgtataaccactcgaaaaat |
179 |
Q |
| |
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|| ||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||| |||||| |
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| T |
54713389 |
tttttagacacgtggaaggtgtacaaagagtggtagccacatagggtg---gttcatgtataatcactcaaaaaat |
54713461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 54713475 - 54713517
Alignment:
| Q |
175 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
217 |
Q |
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| T |
54713475 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
54713517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 570
Target Start/End: Original strand, 54720933 - 54720977
Alignment:
| Q |
526 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcc |
570 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54720933 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcc |
54720977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 562
Target Start/End: Original strand, 54680297 - 54680331
Alignment:
| Q |
528 |
ggtcaattaattaaccatcatatttaacgccatgc |
562 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
54680297 |
ggtcaattaattaaccatcatatttaacgccatgc |
54680331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 54679839 - 54679886
Alignment:
| Q |
175 |
aaaattgttgcaatatttataaactagatttcaacccttttgattggta |
223 |
Q |
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|||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
54679839 |
aaaattattgcaatttttataaactagatttcaa-ccttttgattggta |
54679886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 41665143 - 41665254
Alignment:
| Q |
59 |
gtcttcttttatgagatggcactttcataagattattttatatatttt-ttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgtt |
157 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | || ||| |
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| T |
41665143 |
gtcttcttttatgagctgacactttcataagattattttatatttttttttagacatgtggaaggtgtacaaagagtggtagccacataggatg---gtt |
41665239 |
T |
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| Q |
158 |
catgtataaccactc |
172 |
Q |
| |
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||||||||||||||| |
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| T |
41665240 |
catgtataaccactc |
41665254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 32971827 - 32971718
Alignment:
| Q |
59 |
gtcttcttttatgagatggcactttcataagattattttatatattttttagacatgtggaaggtgtacaaagagtggtagccatataaggtggttgttc |
158 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| ||| | || |||| |
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| T |
32971827 |
gtcttcttttatgagctggcactttcataagattattt-atatttttcttagacatgtgaaaggtgtacaaagagtggtagccacataggatg---gttc |
32971732 |
T |
|
| Q |
159 |
atgtataaccactc |
172 |
Q |
| |
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|||||||||||||| |
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|
| T |
32971731 |
atgtataaccactc |
32971718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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