View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_6 (Length: 432)
Name: NF0540_low_6
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 4325641 - 4326032
Alignment:
| Q |
13 |
aatatcattgaaaagtttgtcaataattttgctgaacattatctttgatagaatcttttaaaccttgnnnnnnncctttcggtgatagttgacatgttat |
112 |
Q |
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| T |
4325641 |
aatatcattgaaaagtttgtcaataattttgctgaacattatctttgatagaattttttaaaccttgtttttt-cctttcggtgatagttgacatgttat |
4325739 |
T |
|
| Q |
113 |
gctatcctatgatatcaaacaaacaaagtactaacaagcctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4325740 |
gctatcctatgatatcaaacaaacaaagtactaacaagcctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatg |
4325839 |
T |
|
| Q |
213 |
taaacaagtaaacaacattactctaacagagaatgtaatcttaactagtaactacttaactgtagcagtgtgagtgtcccctttattttattttcccgct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4325840 |
taaacaagtaaacaacattactctaacagagaatgtaatcttaactagtaactacttaaatgtagcagtgtgagtgtcccctttattttattttcccgct |
4325939 |
T |
|
| Q |
313 |
tccataagcatacatgtgttcattttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4325940 |
tccataagcatacatgtgttcattttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatg |
4326032 |
T |
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