View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0540_low_8 (Length: 358)
Name: NF0540_low_8
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 13574323 - 13574446
Alignment:
| Q |
218 |
ttgccaaccttaaactacgaatcaaaaaaggaaac-agacgtagtaaatactattgttcccactcatacagtcttcaattttgtgaaaataattttccac |
316 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13574323 |
ttgccaaccttaaactacgaatcaaaaaaggaaaccacacgtagtaaatactattgttcccactcatacagtcttcaattttatgaaaataattttccac |
13574422 |
T |
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| Q |
317 |
atgcaaacccttaattcctatgtc |
340 |
Q |
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| T |
13574423 |
atgcaaacccttaattcctatgtc |
13574446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 13570791 - 13570888
Alignment:
| Q |
243 |
aaaaggaaacagacgtagtaaatactattgttcccactcatacagtcttcaattttgtgaaaataattttccacatgcaaacccttaattcctatgtc |
340 |
Q |
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| T |
13570791 |
aaaaggaaacagacgtagtaaatactattgttcccactcatacagtcttcaattttatgaaaataattttccacatgcaaacccttaattcctatgtc |
13570888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 13573900 - 13574028
Alignment:
| Q |
9 |
caacaaaatcattatttcaaagatgaggaatcagataagtttatattacgttagtaatcacccaaataccattatattatattcaggaagaaaattagac |
108 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
13573900 |
caacaaaatcattatttcaaagatgaggaaccagataagcctatattacgctagtaatcacccaaatagcatgatattatattaaggaagaaaattagaa |
13573999 |
T |
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| Q |
109 |
ttcaaccaccagcatctttcataaaaaaa |
137 |
Q |
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| T |
13574000 |
ttcaaccaccagcatctttgataaaaaaa |
13574028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 13563480 - 13563606
Alignment:
| Q |
218 |
ttgccaaccttaaactacgaatcaaaaaaggaaac-agacgtagtaaatactattgttcccactcatacagtcttcaattttgtgaaaataattttccac |
316 |
Q |
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|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
13563480 |
ttgccaaccttaaactacaaatcaaaaaaggaaaccacacgtagtaaatactattgttcccactcatacagtcttcaattttgtg-aattttttttccac |
13563578 |
T |
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| Q |
317 |
atgcaaaccc----ttaattcctatgtc |
340 |
Q |
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|||||||||| |||||||||||||| |
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| T |
13563579 |
atgcaaacccacatttaattcctatgtc |
13563606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 7421189 - 7421313
Alignment:
| Q |
9 |
caacaaaatcattatttcaaagatgaggaatcagataagtttata-ttacgttagtaatcacccaaataccattatattatattcaggaagaaaattaga |
107 |
Q |
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||||||||| ||||||| |||||||||||| | |||||| || | ||| |||||||| |||||||||||||| || | ||||| |||||||||||||| |
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| T |
7421189 |
caacaaaataattatttaaaagatgaggaaacggataagcctaaaattatgttagtaaccacccaaataccatgatgtgatattttggaagaaaattaga |
7421288 |
T |
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| Q |
108 |
cttcaaccaccagcatctttcataa |
132 |
Q |
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||||||||||||||| ||| |||| |
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| T |
7421289 |
attcaaccaccagcatttttgataa |
7421313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 7421700 - 7421790
Alignment:
| Q |
258 |
tagtaaatactattgttcccactcata----cagtcttcaattttgtgaaaataattttccacatgcaaaccc----ttaattcctatgtc |
340 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||| || ||| ||||||| |||||||||||||| |
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| T |
7421700 |
tagtaaatactatttttcccactcatatatacagtcttcaattttgtgaaaataattctctacacacaaacccaaatttaattcctatgtc |
7421790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 13563260 - 13563328
Alignment:
| Q |
9 |
caacaaaatcattatttcaaagatgaggaatcagataagtttatattacgttagtaatcacccaaatac |
77 |
Q |
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||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||| |
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| T |
13563260 |
caacaaagtcattatttcaaagacaaggaaccagataaacctaaattacgttagtaatcatccaaatac |
13563328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 3923786 - 3923725
Alignment:
| Q |
70 |
ccaaataccattatattatattcaggaagaaaattagacttcaaccaccagcatctttcata |
131 |
Q |
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|||||||||||||| | ||||| ||||||||||||||| |||| ||||| |||||||||||| |
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| T |
3923786 |
ccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatctttcata |
3923725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 4219860 - 4219903
Alignment:
| Q |
222 |
caaccttaaactacgaatcaaaaaaggaaacagacgtagtaaata |
266 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
4219860 |
caaccttaaactac-aatcataaaaggaaacacacgtagtaaata |
4219903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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