View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0540_low_9 (Length: 350)
Name: NF0540_low_9
Description: NF0540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0540_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 22057665 - 22057447
Alignment:
| Q |
104 |
cagatatcagttacatagttagggcatttaaagatcattttccctttatttttgcaatgagacaaagtcaaaacctttctgaacaaacaaagtcaaaacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22057665 |
cagatatcagttacatagttagggcatttaaagatcattttccctttatttttgcaatgagacaaagtcaaaacctttttgaacaaacaaagtcaaaacc |
22057566 |
T |
|
| Q |
204 |
ttattaatagctcatagttttaaaccaacaaatccagcagttgagttgaatggtatatgctatcaataaactataagttcacatgctgcagaagccttag |
303 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22057565 |
ttattaatagctcatagtttcaaaccaacaaatccagcagttgagttgaatggtatatgctatcaataaactataagttcacatgctgcagaagccttag |
22057466 |
T |
|
| Q |
304 |
ggcatgcagacaattttct |
322 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22057465 |
ggcatgcagacaattttct |
22057447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 22068789 - 22068737
Alignment:
| Q |
128 |
catttaaagatcattttccctttatttttgcaatgagacaaagtcaaaacctt |
180 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
22068789 |
catttaaagatcattttcccttcatttgtgcaatgagacaaagtcaaaacctt |
22068737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 22068623 - 22068561
Alignment:
| Q |
260 |
atgctatcaataaactataagttcacatgctgcagaagccttagggcatgcagacaattttct |
322 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
22068623 |
atgctatcactaaactaaaagttcacatgttgtagaagcctttgggcatgcagacaattttct |
22068561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22057756 - 22057712
Alignment:
| Q |
13 |
aatattaaacacaaatatgtatcagaatctatactacataaggac |
57 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22057756 |
aatattagacacaaatatgtatcagaatctatactacataaggac |
22057712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 22068736 - 22068677
Alignment:
| Q |
200 |
aaccttattaata-gctcatagttttaaaccaacaaatccagcagttgagttgaatggta |
258 |
Q |
| |
|
||||||| ||||| |||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
22068736 |
aaccttaataataagctcatagttcaaaaccaccaaatccagcagttgaattgaatggta |
22068677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 22076785 - 22076741
Alignment:
| Q |
257 |
tatatgctatcaataaactataagttcacatgctgcagaagcctt |
301 |
Q |
| |
|
||||||||||| |||||||| ||||||||| | |||||||||||| |
|
|
| T |
22076785 |
tatatgctatctataaactaaaagttcacacgttgcagaagcctt |
22076741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9 times since January 2019
Visitors: 3646