View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0541_high_11 (Length: 346)

Name: NF0541_high_11
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0541_high_11
NF0541_high_11
[»] chr5 (3 HSPs)
chr5 (13-318)||(18024826-18025136)
chr5 (263-303)||(40880574-40880614)
chr5 (267-303)||(36070458-36070494)
[»] chr8 (3 HSPs)
chr8 (263-315)||(21240542-21240594)
chr8 (229-287)||(13014304-13014362)
chr8 (263-299)||(38063861-38063897)
[»] chr2 (4 HSPs)
chr2 (263-306)||(17323143-17323186)
chr2 (263-306)||(29171135-29171178)
chr2 (263-306)||(5816787-5816830)
chr2 (263-301)||(35549477-35549515)
[»] chr1 (3 HSPs)
chr1 (229-306)||(10833825-10833903)
chr1 (263-303)||(10163226-10163266)
chr1 (270-306)||(3447054-3447090)
[»] chr6 (3 HSPs)
chr6 (263-304)||(1520058-1520099)
chr6 (263-303)||(1515880-1515920)
chr6 (263-303)||(1517971-1518011)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 18025136 - 18024826
Alignment:
Q  13 aaaatcatatacaaaaggaacaagtgtagttctaattggttgcttccatagacgttcctaagtacatgg-taacaaagtaacaacaat---cacgaaatg 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||    
T  18025136 aaaatcatatacaaaacgaacaagtgtagttctaattggttgcttccatagacgttcctaagtacatgggtaacaaagtaacaacaataatcacgaaatg 18025037  T
Q  109 ttcacatgttaaatacccaatacattaattgtatgcctccaacgtgttggataatacatggatccagatcttcagaaactgaccaatgatactatttttc 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18025036 ttcacatgttaaatacccaatacattaaatgtatgcctccaacgtgttggataatatatggatccagatcttcagaaactgaccaatgatactatttttc 18024937  T
Q  209 gattatattaacgaaagaccaagacaaaattaagaaaa-ttttttataagctctatcaatcgaaagtaattctatatgatgtgtgttagacactaaatac 307  Q
    |||||||||| |||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18024936 gattatattaccgaaagaccaagacaaaattaagaaaagaattttataacctctatcaatcgaaagtaattctatatgatgtgtgttagacactaaatac 18024837  T
Q  308 gagtatttagt 318  Q
    |||||||||||    
T  18024836 gagtatttagt 18024826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 40880614 - 40880574
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaa 303  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  40880614 tcaatcgaaagtaattctatatgatgtgtttcagacactaa 40880574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 36070458 - 36070494
Alignment:
Q  267 tcgaaagtaattctatatgatgtgtgttagacactaa 303  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  36070458 tcgaaagcaattctatatgatgtgtgtcagacactaa 36070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 21240594 - 21240542
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaaatacgagtattt 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  21240594 tcaatcgaaagtaattctatatgatgtgtgtgagacactaaatatgagtattt 21240542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 13014304 - 13014362
Alignment:
Q  229 aagacaaaattaagaaaattttttataagctctatcaatcgaaagtaattctatatgat 287  Q
    ||||||||||||||||  ||||||||||  | | |||||||||||||||||||||||||    
T  13014304 aagacaaaattaagaattttttttataacttttttcaatcgaaagtaattctatatgat 13014362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 38063861 - 38063897
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagaca 299  Q
    ||||||||||||||||||| | |||||||||||||||    
T  38063861 tcaatcgaaagtaattctacaagatgtgtgttagaca 38063897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 17323143 - 17323186
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaaata 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  17323143 tcaatcgaaagtaattctatatgatgtgtgtcagacactaaata 17323186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 29171135 - 29171178
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaaata 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  29171135 tcaatcgaaagtaattctatatgatgtgtgtcagacactaaata 29171178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 5816830 - 5816787
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaaata 306  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  5816830 tcaatcaaaagtaattttatatgatgtgtgttagacactaaata 5816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 35549477 - 35549515
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacact 301  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  35549477 tcaatcgaaagtaattctatatgatttgtgtcagacact 35549515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 10833903 - 10833825
Alignment:
Q  229 aagacaaaattaagaaaatttttt-ataagctctatcaatcgaaagtaattctatatgatgtgtgttagacactaaata 306  Q
    ||||||||||||||||||   ||| ||||| ||  ||||||||||||||||||||||||||||||| ||| ||||||||    
T  10833903 aagacaaaattaagaaaagaatttcataagttccttcaatcgaaagtaattctatatgatgtgtgtcagatactaaata 10833825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 10163266 - 10163226
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaa 303  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  10163266 tcaatcgaaagtaattctatatgatgtgtatcagacactaa 10163226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 3447054 - 3447090
Alignment:
Q  270 aaagtaattctatatgatgtgtgttagacactaaata 306  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  3447054 aaagtaattttatatgatgtgtgtcagacactaaata 3447090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 1520058 - 1520099
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaaa 304  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  1520058 tcaattgaaagtaattctatatgatgtatgttagacactaaa 1520099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 1515880 - 1515920
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaa 303  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  1515880 tcaattgaaagtaattctatatgatgtatgttagacactaa 1515920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 1517971 - 1518011
Alignment:
Q  263 tcaatcgaaagtaattctatatgatgtgtgttagacactaa 303  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  1517971 tcaattgaaagtaattctatatgatgtatgttagacactaa 1518011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1848 times since January 2019
Visitors: 3673