View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_high_14 (Length: 292)
Name: NF0541_high_14
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 5112078 - 5112272
Alignment:
| Q |
1 |
tctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaa |
100 |
Q |
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| T |
5112078 |
tctatctttttcataatgatttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttgcaactatccgggaataattttgacaa |
5112177 |
T |
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| Q |
101 |
aggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
195 |
Q |
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| T |
5112178 |
aggacgtattccggctgatattggaaaattgatcaaacttcaagttttgtatctcgcagaaaacaacttcgagggtaagatatttgtgtcaatat |
5112272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 5095320 - 5095514
Alignment:
| Q |
1 |
tctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaa |
100 |
Q |
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| T |
5095320 |
tctatcttcttcataatgatttttatggtgcaatgccaaatgtttggcatgattgcaaagagttggaagatttagaattgtccttaaataattttgacaa |
5095419 |
T |
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| Q |
101 |
aggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
195 |
Q |
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| T |
5095420 |
aggacgtattccggctgacattggaaaattggccaaacttcaatttctgtatcttgcagataacaacttggagggtaagatatttttgccaatat |
5095514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 5112346 - 5112417
Alignment:
| Q |
213 |
aaatattaagtttttgcttattgttttcttaaagttaaaaatgttgccattgattttgatttttcctatgat |
284 |
Q |
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| T |
5112346 |
aaatattaagtttttatttattgtttccttaaagttaaaaatgttgccattgattttgatttttcctatgat |
5112417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 5083000 - 5082839
Alignment:
| Q |
22 |
tttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatat |
121 |
Q |
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| T |
5083000 |
tttctggtgagatgccaaatgtttggcattattgcaaagagttggaagaattgatactatctttcaataattttgacaaaggacatatgccagctgacat |
5082901 |
T |
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| Q |
122 |
tggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatat |
183 |
Q |
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| T |
5082900 |
tgcaaacttgccaaagcttcaatctttgtatcttattagcaacaacttggagggtaagatat |
5082839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 14427412 - 14427228
Alignment:
| Q |
1 |
tctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaa |
100 |
Q |
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||||||||| | ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
14427412 |
tctatctttatgctaatgatttttctggtatgatgccaaatgtttggcgtgattgcaaagagttggaagaattggaattatccaaaaataattttgacaa |
14427313 |
T |
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| Q |
101 |
aggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatattt |
185 |
Q |
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| T |
14427312 |
aggacgtatacctgctgacattggaaaattgaccaaacttcagtctctgtatctcgcaaaaaacaacttggagggtaagatattt |
14427228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 16874762 - 16874943
Alignment:
| Q |
1 |
tctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaa |
100 |
Q |
| |
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||||||||| |||||||| |||||||||| | ||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||||||| || |
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| T |
16874762 |
tctatctttatcataatgatttttctggtaaaattccaaatatttggcgttattgcaaagagttggaagatttagagctatccttcaataattttgataa |
16874861 |
T |
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| Q |
101 |
aggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagata |
182 |
Q |
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|||||||||||| |||| |||||||| |||| ||| |||| | ||||||||| | ||||||||||||||||||||| |
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| T |
16874862 |
aggacgtattccatctgagattggaaacttgaccaagcttcggtatttgtatcttcctagcaacaacttggagggtaagata |
16874943 |
T |
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