View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0541_high_15 (Length: 287)

Name: NF0541_high_15
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0541_high_15
NF0541_high_15
[»] chr3 (3 HSPs)
chr3 (1-235)||(5382983-5383218)
chr3 (1-203)||(13722733-13722920)
chr3 (1-85)||(4100283-4100367)
[»] chr1 (5 HSPs)
chr1 (1-235)||(42375551-42375785)
chr1 (7-235)||(23200582-23200807)
chr1 (1-235)||(14476554-14476776)
chr1 (9-136)||(2796738-2796865)
chr1 (93-176)||(24567624-24567707)
[»] chr6 (2 HSPs)
chr6 (1-186)||(32704059-32704244)
chr6 (1-214)||(16777469-16777670)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-235)||(29173-29395)
[»] chr8 (1 HSPs)
chr8 (1-235)||(86694-86916)
[»] chr7 (2 HSPs)
chr7 (1-186)||(11711527-11711700)
chr7 (10-235)||(13160776-13161005)
[»] chr4 (1 HSPs)
chr4 (100-235)||(14023913-14024048)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5383218 - 5382983
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |    
T  5383218 tttttcgcaaaactaacgccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccggcaaacgac 5383119  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctg-ccacg 199  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  5383118 tcgccggagttctcgtcggaccaccacccgccgccactaaccaccaccggaagtctagaggttgaagacgaccagtcagcagccacatcacctgcccacg 5383019  T
Q  200 tgtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    |||| |||||||||| || ||  | |||||||||||    
T  5383018 tgtcacttccaaccaataacttaccgccacgtgtca 5382983  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13722920 - 13722733
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  13722920 tttttcgcaaaactaacaccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg-- 13722823  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
               |||||||||||| |||||||| || | ||||||  |||   ||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  13722822 ----------actcgccggaccaccacccgcctccactaaccactgccg---gtctagaggttgaagacgaccagtcagcagccgcatcagctgccacgt 13722736  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4100283 - 4100367
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccac 85  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4100283 tttttcgcaaaactaacgccgccattgcgttcggaaggccgaaaaaccttggattggaggtttttgtcaccaacagagcctccac 4100367  T

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Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42375551 - 42375785
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| |    
T  42375551 tttttcgcaaaactaacgccgccattgcgttcggaaggccaaaaaacattggattggaggtttttgtcaccaacggagcctctacgagccgccaaacgac 42375650  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
    ||||| ||||||| ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  42375651 tcgccagagttcttgccggaccaccacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccggtcagcagccacatcatctgccacgt 42375750  T
Q  201 gtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    ||| |||||||||| || ||  | |||||||||||    
T  42375751 gtcacttccaaccaataactcaccgccacgtgtca 42375785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 23200582 - 23200807
Alignment:
Q  7 gcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccg 106  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||| |||    
T  23200582 gcaaaactaacgccgccattgcattcggaaggccgaaaaaccttggacaggaggtttttgtcaccaacgaagcctccacgagccgccaaacgactcaccg 23200681  T
Q  107 gagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgct 206  Q
    ||||||||| ||||||| |||||||||||     ||||| || ||||||||||||||||||| || ||||||||||||||| || |||||||||||| ||    
T  23200682 gagttctcgtcggaccaccacccgccgcctt---ccaccgccagaagtctagaggttgaagatgaccagtcagcagccacaccagctgccacgtgtcact 23200778  T
Q  207 tccaaccagtagctagctgccacgtgtca 235  Q
    ||||| || || ||  | |||||||||||    
T  23200779 tccaatcaataacttaccgccacgtgtca 23200807  T

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Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14476776 - 14476554
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  14476776 tttttcgcaaaattaacgccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg-- 14476679  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
               |||||||||||| ||||||||||| | ||||| | ||||| | ||||||||||||||||| |||||||||||||||||| |||||||||    
T  14476678 ----------actcgccggaccaccacccgccgccactaaccatcgccggatggctagaggttgaagacgaccagtcagcagccacatcagctgccacgt 14476589  T
Q  201 gtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    ||| |||||||||| || ||  | |||||||||||    
T  14476588 gtcacttccaaccaataacttaccgccacgtgtca 14476554  T

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Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 2796865 - 2796738
Alignment:
Q  9 aaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccgga 108  Q
    |||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  2796865 aaaaataacgccgccattgcgttcggaaggccgaaaaaccctgggctggaggtttttgtcaccaacggagcctccacgagccgccaaacgactcgtcgga 2796766  T
Q  109 gttctcgccggaccatcacccgccgccg 136  Q
    ||||||||||||||| |||||| |||||    
T  2796765 gttctcgccggaccaccacccgtcgccg 2796738  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 24567707 - 24567624
Alignment:
Q  93 caaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagt 176  Q
    |||||||||| || ||||||||| | ||||| ||||| ||  | || |||||||||||||||| ||||||||||||||| ||||    
T  24567707 caaacgcctctccagagttctcgtcagaccaccacccaccaacacacaccaccaccggaagtcaagaggttgaagacgaccagt 24567624  T

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Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 32704059 - 32704244
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |    
T  32704059 tttttcgcaaaactaacgctgccattgcgttcggaaggccgaaaaaccttggaccggtggtttttgtcaccaacggagcctccacgagccgccaaacgac 32704158  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccac 186  Q
    | ||||||| ||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  32704159 ttgccggagctctcgccggaccaccacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcagccac 32704244  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16777670 - 16777469
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  16777670 ttttttgcaaaactaaagccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg-- 16777573  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
               |||||||||||| |||||||| || | ||||||||||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||    
T  16777572 ----------actcgccggaccaccacccgccaccactaaccaccaccggaagtctagaggatgaagacaaccagtcaacagccacatcagctgccacgt 16777483  T
Q  201 gtcgcttccaacca 214  Q
    ||| ||||||||||    
T  16777482 gtcacttccaacca 16777469  T

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Target: scaffold0015 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29395 - 29173
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  29395 tttttcgcaaaactaacgccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg-- 29298  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
               |||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  29297 ----------actcgccggaccaccacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcagccacatcaccagccacgt 29208  T
Q  201 gtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    ||| ||| |||||| || ||  | |||||||||||    
T  29207 gtcactttcaaccaataacttaccgccacgtgtca 29173  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 86694 - 86916
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  86694 tttttcgcaaaactaacgccgccattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg-- 86791  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgt 200  Q
               |||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  86792 ----------actcgccggaccaccacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcagccacatcaccagccacgt 86881  T
Q  201 gtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    ||| ||| |||||| || ||  | |||||||||||    
T  86882 gtcactttcaaccaataacttaccgccacgtgtca 86916  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 11711527 - 11711700
Alignment:
Q  1 ttttttgcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcc 100  Q
    ||||| ||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |      
T  11711527 tttttcgcaaaactaactccgccattgctttctgaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaatg-- 11711624  T
Q  101 tcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccac 186  Q
               |||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  11711625 ----------actcgccggaccaccacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcaaccac 11711700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 13160776 - 13161005
Alignment:
Q  10 aaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaac---ggagcctccacgagtcgccaaacgcctcgccg 106  Q
    ||||||||||| |||||| |||  |||||||||||||||||||  ||||||||||||||||||||   |||||||||||||| ||||||||| ||||||     
T  13160776 aaactaacgccaccattgcgtttagaaggccgaaaaaccttggcttggaggtttttgtcaccaacggaggagcctccacgagccgccaaacgactcgcca 13160875  T
Q  107 gagttctcgccggaccatc-acccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgc 205  Q
    ||||||| ||||||||| | ||  || ||| ||||||||| | ||| || ||||||||||||||||  ||||| ||||||||||| ||||||  |||| |    
T  13160876 gagttctggccggaccaccaacatgctgccacaaaccaccgctggatgtttagaggttgaagacgacaagtcaacagccacatcagctgccagatgtcac 13160975  T
Q  206 ttccaaccagtagctagctgccacgtgtca 235  Q
    ||||||||| |  || | ||||||||||||    
T  13160976 ttccaaccaatgacttgttgccacgtgtca 13161005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 14023913 - 14024048
Alignment:
Q  100 ctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacg 199  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||| || ||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  14023913 ctcgccggagttctcgccggaccaccacccgccgccactaaccaccgccagaagtttagaggttgaagacgaccagccagcagccacatcagctgccacg 14024012  T
Q  200 tgtcgcttccaaccagtagctagctgccacgtgtca 235  Q
    |||| |||||||||| || || |||| |||||||||    
T  14024013 tgtcacttccaaccaataacttgctgacacgtgtca 14024048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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