View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_high_2 (Length: 647)
Name: NF0541_high_2
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 49 - 490
Target Start/End: Original strand, 5332335 - 5332773
Alignment:
| Q |
49 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5332335 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5332434 |
T |
|
| Q |
149 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5332435 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5332534 |
T |
|
| Q |
249 |
nnnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatt |
348 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332535 |
ttt---gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatt |
5332631 |
T |
|
| Q |
349 |
tccatggtgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatc |
448 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332632 |
tccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatc |
5332731 |
T |
|
| Q |
449 |
aagctaaaaggaattaaacaataggtggaagaactttccttc |
490 |
Q |
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| T |
5332732 |
aagctaaaaggaattaaacaataggtcgaagaactttccttc |
5332773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 49 - 490
Target Start/End: Original strand, 5350054 - 5350492
Alignment:
| Q |
49 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5350054 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5350153 |
T |
|
| Q |
149 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
248 |
Q |
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| T |
5350154 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5350253 |
T |
|
| Q |
249 |
nnnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatt |
348 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350254 |
ttt---gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatt |
5350350 |
T |
|
| Q |
349 |
tccatggtgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatc |
448 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350351 |
tccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatc |
5350450 |
T |
|
| Q |
449 |
aagctaaaaggaattaaacaataggtggaagaactttccttc |
490 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5350451 |
aagctaaaaggaattaaacaataggtcgaagaactttccttc |
5350492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 549 - 618
Target Start/End: Original strand, 5332834 - 5332903
Alignment:
| Q |
549 |
taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcac |
618 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332834 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcac |
5332903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 549 - 618
Target Start/End: Original strand, 5350553 - 5350622
Alignment:
| Q |
549 |
taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcac |
618 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350553 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcac |
5350622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 23585699 - 23585669
Alignment:
| Q |
289 |
caaactcagtgtcaatctaaacatacactaa |
319 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23585699 |
caaactcagtgtcaatctaaacatacactaa |
23585669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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