View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_high_7 (Length: 393)
Name: NF0541_high_7
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 36769912 - 36770266
Alignment:
| Q |
10 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatatgccacttctattctacaatgtctctctggaagataaagaaagatacacactacaa |
109 |
Q |
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| T |
36769912 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatattccacttttatactacaatgtctctctggaagataaagaaagatacacactacaa |
36770011 |
T |
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| Q |
110 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctcaagtttggttaatcttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36770012 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctcaagtttggttagtcttg |
36770111 |
T |
|
| Q |
210 |
tcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgcttgttctggagttgatagctttatatgcatgcatgt |
309 |
Q |
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| T |
36770112 |
tcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgcttgttctggagttgatagctttatatgcatgcatgt |
36770211 |
T |
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| Q |
310 |
gtactaatgaaattatgcatttattctctaaagatcaatgcatgcatgtaagatc |
364 |
Q |
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| T |
36770212 |
gtactaatgaaattatgcatttattctctaaagatcaatggatgcatgtaagatc |
36770266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 364
Target Start/End: Original strand, 36746613 - 36746797
Alignment:
| Q |
175 |
atcatcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgct |
274 |
Q |
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| T |
36746613 |
atcatcatcatcttctttaagtttggtgagtcttgtcttagatttctacttttgatgtgagaacatcttctaaaattagaactatgtgcttgcatgtgtt |
36746712 |
T |
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| Q |
275 |
tgttctggagttgatagctttatatgcatgcatgtgtactaatgaaattatgcatttattctctaaagatcaatgcatgcatgtaagatc |
364 |
Q |
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| T |
36746713 |
tgttctggagttggtagct-----tacatgcatatgcactaatgaaattatgcatttattctctaaagatcaatgcatgcatgtaagatc |
36746797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 185 - 362
Target Start/End: Original strand, 36746874 - 36747044
Alignment:
| Q |
185 |
tctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgcttgttctggag |
284 |
Q |
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| T |
36746874 |
tctccctcaagtttggtgagtcttgtcttagattttt---ttttatgtgagaacatcttctcaaattagagctatgtgcttgcatgtgcttgttgtggac |
36746970 |
T |
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| Q |
285 |
ttgatagctttatatgcatgcatgtgtactaatgaaattatgcatttattctctaaagatcaatgcatgcatgtaaga |
362 |
Q |
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| T |
36746971 |
ttgatagctttat----atgcatgtgtactaattaaattattcatttattctttaaagatcaaagaatgcatgtaaga |
36747044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 36765399 - 36765555
Alignment:
| Q |
175 |
atcatcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgct |
274 |
Q |
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| T |
36765399 |
atcatcattttatcctttaagtttggtgagtcttgttttagatttctacttttgatgtgagaacatcttctaaaattagaactatgtgcttgcatgtgct |
36765498 |
T |
|
| Q |
275 |
tgttctggagttgatagctttatatgcatgcatgtgtactaatgaaattatgcatttattct |
336 |
Q |
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| T |
36765499 |
tgttctggagttgatagct-----tgcatgcatgtatactaatgaaattatgcatttattct |
36765555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 36754277 - 36754397
Alignment:
| Q |
178 |
atcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtgcttgcatgtgcttgt |
277 |
Q |
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| T |
36754277 |
atcatcttctctatcaagtttggtgagtcttgtcttagatttttacttttgatgtgagaacatcttctccaattagagctatat------atgtgcttgc |
36754370 |
T |
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| Q |
278 |
tctggagttgatagctttatatgcatg |
304 |
Q |
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| T |
36754371 |
tgtggagttgatatctttatatgcatg |
36754397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 36746538 - 36746605
Alignment:
| Q |
69 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
136 |
Q |
| |
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| T |
36746538 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctccgcttgaactagagaga |
36746605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 36765323 - 36765390
Alignment:
| Q |
69 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
136 |
Q |
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| T |
36765323 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctcagcttgaattagagaga |
36765390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 36754185 - 36754219
Alignment:
| Q |
319 |
aaattatgcatttattctctaaagatcaatgcatg |
353 |
Q |
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| T |
36754185 |
aaattatgcatttattctctaaagatcattgcatg |
36754219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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