View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0541_low_1 (Length: 1081)

Name: NF0541_low_1
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0541_low_1
NF0541_low_1
[»] chr4 (7 HSPs)
chr4 (1-939)||(44752773-44753699)
chr4 (321-435)||(37939209-37939323)
chr4 (85-130)||(44758304-44758349)
chr4 (128-178)||(44758395-44758445)
chr4 (85-130)||(44760582-44760627)
chr4 (128-178)||(44760673-44760723)
chr4 (369-435)||(55365642-55365708)
[»] chr7 (3 HSPs)
chr7 (317-435)||(2213970-2214088)
chr7 (351-427)||(45374388-45374464)
chr7 (28-93)||(2214897-2214962)
[»] chr2 (2 HSPs)
chr2 (359-428)||(8497212-8497281)
chr2 (351-435)||(37053070-37053154)
[»] chr6 (1 HSPs)
chr6 (369-435)||(14009714-14009780)
[»] chr5 (1 HSPs)
chr5 (369-435)||(19614435-19614501)
[»] chr3 (1 HSPs)
chr3 (350-427)||(21193397-21193474)


Alignment Details
Target: chr4 (Bit Score: 736; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 1 - 939
Target Start/End: Complemental strand, 44753699 - 44752773
Alignment:
Q  1 gctgttgctgaaagtggaaggctgtggttgtgcgtcccttcgtatgttgtgattagaatagacatgtcctcaacacatctttgtacctgaaatttataat 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44753699 gctgttgctgaaagtggaaggctgtggttgtgtgtcccttcgtatgttgtgattagaatagacatgtcctcaacacatctttgtacctgaaatttataat 44753600  T
Q  101 tacatgt----ggtgcattttagatatgtgaaaacattcaattaaatgtcattgtagcctcgagcacaaaatatgattggatggatatatgcgtaaattt 196  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||    
T  44753599 tacatgtacgtggtgcattttagatatgtgaaaacattcaattaaatgtcattgtagcctcgagcacaaaatatg----------------cgtaaattt 44753516  T
Q  197 tctaggtgctaaataaatgaatagtttatattctttgtccttctttttgatgaagaatagttaagattctactttgtgtaaatgattaatttcaattgaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44753515 tctaggtgctaaataaatgaatagtttatattctttgtccttctttttgatgaagaatagttaagattctactttgtgtaaatgattaatttcaattgaa 44753416  T
Q  297 acacaatga-------------------aaatataaatgtacctgttttctaactggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaa 377  Q
    |||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44753415 acacaatgacaacatgagagtgtaatgaaaatataaatgtacctgttttctaactggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaa 44753316  T
Q  378 gggtttccctttgcaattttttgtccatacttcctccattggcatccatcattcatctattttgagaaatcaaaatgtgaacaaatggttttcattattt 477  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44753315 ggatttccctttgcaattttttgtccatacttcctccattggcatccatcattcatctattttgagaaatcaaagtgtgaacaaatggttttcattattt 44753216  T
Q  478 atattaagagaaaaacttacaatttctctattttaatctaacgatctacagttgaattgcaccatgtaacatcgaatttgatataaaatgatgcgaggaa 577  Q
    ||| |||||||||||||||||||||||||||||                    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  44753215 atactaagagaaaaacttacaatttctctatttc-------------------gaattgcaccatgtaacatcgaatatgatataaaatgatgtgaggaa 44753135  T
Q  578 atagagaagtatttaccgttggggtgtcacatcttgctctaacacaaactctagctttctttgcaggagtttgttgagcaacttcatcctcagcatctct 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44753134 atagagaagtatttaccgttggggtgtcacatcttgctctaacacaaactctagctttctttgcaggagtttgttgagcaacttcatcctcagcatctct 44753035  T
Q  678 cattgtcttattgagtgtcttacttggtggccaagtctccacaacttcatcattctttattggaacaacttcagaactattcactggacttggaatattt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44753034 cattgtcttattgagtgtcttacttggtggccaagtctccacaacttcatcattctttattggaacaacttcagaactattcactggacttggaatattg 44752935  T
Q  778 ggtaacccttcagttgtgctacctgattttgatgtttcaaatttacattccaatccaagtgacaactcttccttattgaattcttcatcattattcaatg 877  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44752934 ggtaacccttcagttgtgctacctgattttgatgtttcaaatttacattccaatccaagtgacaactcttccttattgaattcttcatcattattcaatg 44752835  T
Q  878 ctagtttagacactttgttaactttctcttgatcattttttggaatattgttactaggaact 939  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44752834 ctagtttagacactttgttaactttctcttgatcattttttggaatattgttactaggaact 44752773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 321 - 435
Target Start/End: Complemental strand, 37939323 - 37939209
Alignment:
Q  321 tgttttctaactggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccattggc 420  Q
    |||||||||||||||||   ||| ||||| || ||||||||||| || || || || || ||||| ||||| |||||||||||||| || ||||||||||    
T  37939323 tgttttctaactggacagcctggagcaacagtacagcgatagtaggcacgtggacatggatttccttttgctattttttgtccatattttctccattggc 37939224  T
Q  421 atccatcattcatct 435  Q
    | |||||||||||||    
T  37939223 acccatcattcatct 37939209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 44758304 - 44758349
Alignment:
Q  85 acctgaaatttataattacatgtggtgcattttagatatgtgaaaa 130  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||    
T  44758304 acctgaaattcataattacatgtggtgcattttagatacgtgaaaa 44758349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 44758395 - 44758445
Alignment:
Q  128 aaacattcaattaaatgtcattgtagcctcgagcacaaaatatgattggat 178  Q
    |||||||||||| ||||| |||||||||| ||||||||||||| |||||||    
T  44758395 aaacattcaattgaatgtaattgtagccttgagcacaaaatataattggat 44758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 44760582 - 44760627
Alignment:
Q  85 acctgaaatttataattacatgtggtgcattttagatatgtgaaaa 130  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  44760582 acctgaaattcataattatatgtggtgcattttagatacgtgaaaa 44760627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 44760673 - 44760723
Alignment:
Q  128 aaacattcaattaaatgtcattgtagcctcgagcacaaaatatgattggat 178  Q
    |||| ||||||| ||||| |||||||||| ||||||||||||| |||||||    
T  44760673 aaacgttcaattgaatgtaattgtagccttgagcacaaaatataattggat 44760723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 55365642 - 55365708
Alignment:
Q  369 cgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatcattcatct 435  Q
    ||||| ||||||||||| || || ||||||||||| || || | |||||||||||||||||| ||||    
T  55365642 cgaggacaagggtttcctttagccattttttgtccgtattttcgccattggcatccatcattgatct 55365708  T

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Target: chr7 (Bit Score: 55; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 317 - 435
Target Start/End: Complemental strand, 2214088 - 2213970
Alignment:
Q  317 tacctgttttctaactggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccat 416  Q
    ||||||||| |||||||| || | |||||||||||| || |||||||||||||  || || || ||||| ||||| || ||||||||||| |||||||||    
T  2214088 tacctgtttcctaactgggcaagctggtgcaactgtacaacgatagtaagctcttggacatggatttccttttgctatcttttgtccatatttcctccat 2213989  T
Q  417 tggcatccatcattcatct 435  Q
    || ||||||||||||||||    
T  2213988 tgacatccatcattcatct 2213970  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 45374388 - 45374464
Alignment:
Q  351 gtgcagcgatagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatc 427  Q
    ||||| |||||||| || ||||| |||||||| ||||| || |||||||||||||| |||||||| || ||||||||    
T  45374388 gtgcaacgatagtaggcacgaggacaagggttacccttggccattttttgtccatatttcctccactgacatccatc 45374464  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 2214962 - 2214897
Alignment:
Q  28 ttgtgcgtcccttcgtatgttgtgattagaatagacatgtcctcaacacatctttgtacctgaaat 93  Q
    ||||| || ||||| |||||||||||||  || |||||||| ||| |||||||||| |||||||||    
T  2214962 ttgtgtgttccttcatatgttgtgattaagatggacatgtcatcagcacatctttggacctgaaat 2214897  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 8497212 - 8497281
Alignment:
Q  359 atagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatca 428  Q
    |||||| |||||||| || || ||||| || || |||||||||||||| || ||||||||||||||||||    
T  8497212 atagtatgctcgaggacatggatttcctttagccattttttgtccatattttctccattggcatccatca 8497281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 37053154 - 37053070
Alignment:
Q  351 gtgcagcgatagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatcattcatct 435  Q
    ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||| |||||||| || |||||||| ||||    
T  37053154 gtgcatcgataataagctcgaggacacgggtttcctttcgccattttctgtccgtactttctccattgacacccatcattgatct 37053070  T

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Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 14009714 - 14009780
Alignment:
Q  369 cgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatcattcatct 435  Q
    ||||| ||||||||||| || || ||||||||||| || || | |||||||||||||||||| ||||    
T  14009714 cgaggacaagggtttcctttagccattttttgtccgtattttcgccattggcatccatcattgatct 14009780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 19614501 - 19614435
Alignment:
Q  369 cgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatcattcatct 435  Q
    ||||| ||||||||||| || || ||||||||||| || || | |||||||||||||||||| ||||    
T  19614501 cgaggacaagggtttcctttagccattttttgtccgtattttcgccattggcatccatcattgatct 19614435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 21193474 - 21193397
Alignment:
Q  350 tgtgcagcgatagtaagctcgagggcaagggtttccctttgcaattttttgtccatacttcctccattggcatccatc 427  Q
    |||||| ||||| |||||||  || || |||||||||||||| || || |||||||| || |||||||| ||||||||    
T  21193474 tgtgcaacgataataagctcttggacatgggtttccctttgccatcttctgtccatattttctccattgacatccatc 21193397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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