View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_10 (Length: 425)
Name: NF0541_low_10
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 15753772 - 15753373
Alignment:
| Q |
19 |
ctcctgcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtttcaagataatc |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753772 |
ctccagcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtttcaagataatc |
15753673 |
T |
|
| Q |
119 |
tccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggcatccactcaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753672 |
tccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggcatccactcaat |
15753573 |
T |
|
| Q |
219 |
aaaaccacaagtgctagatgaaaccatggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaatcaacacaaccactgcga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753572 |
aaaaccacaagtgctagatgaaaccatggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaatcaacacaaccactgcga |
15753473 |
T |
|
| Q |
319 |
tacaacataaacataattcaaatattaatgttgtaatatgtgattattatacacattaatcggactcattatttggtgcttaatctatatgttcatatca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15753472 |
tacaacataaacataattcaaatattaatgttgtaatatgtgattattatacacattaaccggactcattatttggtgcttaatctatatgttcatatca |
15753373 |
T |
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