View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0541_low_11 (Length: 414)

Name: NF0541_low_11
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0541_low_11
NF0541_low_11
[»] chr3 (12 HSPs)
chr3 (103-276)||(37652433-37652606)
chr3 (110-276)||(37635401-37635564)
chr3 (110-276)||(37638315-37638478)
chr3 (110-276)||(37643690-37643853)
chr3 (110-276)||(37646603-37646766)
chr3 (110-276)||(37649516-37649679)
chr3 (309-404)||(37652307-37652402)
chr3 (304-404)||(37635280-37635377)
chr3 (304-404)||(37638194-37638291)
chr3 (304-404)||(37646482-37646579)
chr3 (304-404)||(37649395-37649492)
chr3 (309-404)||(37643569-37643661)
[»] chr2 (1 HSPs)
chr2 (357-404)||(5884252-5884299)
[»] chr4 (1 HSPs)
chr4 (364-404)||(32388617-32388657)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 37652606 - 37652433
Alignment:
Q  103 aaattttgggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttctt 202  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37652606 aaatttcgggaaaccaaagatttttgaatgatggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttcaataaaaaagcaactatcttctt 37652507  T
Q  203 ccaataagaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37652506 ccaataagaaggaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 37652433  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 37635564 - 37635401
Alignment:
Q  110 gggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttcttccaataa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||      
T  37635564 gggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaaggttacaaatgcgttccatagaaaagcaactatcttcttccaat-- 37635467  T
Q  210 gaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  37635466 -aaggaggagataggaaataagagtttcatctcattctctcttttctactattctatttcttttatc 37635401  T

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Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 37638478 - 37638315
Alignment:
Q  110 gggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttcttccaataa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||      
T  37638478 gggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaaggttacaaatgcgttccatagaaaagcaactatcttcttccaat-- 37638381  T
Q  210 gaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  37638380 -aaggaggagataggaaataagagtttcatctcattctctcttttctactattctatttcttttatc 37638315  T

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Target: chr3; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 37643853 - 37643690
Alignment:
Q  110 gggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttcttccaataa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||      
T  37643853 gggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaaggttacaaatgcgttccatagaaaagcaactatcttcttccaat-- 37643756  T
Q  210 gaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  37643755 -aaggaggagataggaaataagagtttcatctcattctctcttttctactattctatttcttttatc 37643690  T

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Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 37646766 - 37646603
Alignment:
Q  110 gggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttcttccaataa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||      
T  37646766 gggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaatgttacaaatgcgttccatagaaaagcaactatcttcttccaat-- 37646669  T
Q  210 gaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  37646668 -aaggaggagataggaaataagagtttcatctcattctctcttttctactattctatttcttttatc 37646603  T

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Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 37649679 - 37649516
Alignment:
Q  110 gggaaaccaaagatttttgaatggtggaaaaatgttgaagcaatggtataagaaggttacaaatgtgttccataaaaaagcaactatcttcttccaataa 209  Q
    |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||      
T  37649679 gggaaaccaaagatgtttgaagggtggaaaaatgttgaagcaattgtataagaaggttacaaatgcgttccatagaaaagcaactatcttcttccaat-- 37649582  T
Q  210 gaagaaggagataggaaataagagtttcatctcattctctcttttctagcattttatttcttttatc 276  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  37649581 -aaggaggagataggaaataagagtttcatctcattctctcttttctactattctatttcttttatc 37649516  T

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Target: chr3; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 37652402 - 37652307
Alignment:
Q  309 gtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctatg 404  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37652402 gtggagcgatgttagcagctttgatgctatgcctcttaggcgtcaccgtttatggtgaagatccttacatttactatacatggaaggttacctatg 37652307  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37635377 - 37635280
Alignment:
Q  304 gggttgtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctat 403  Q
    |||| ||||||||||||||||   ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  37635377 gggtcgtggagcggtgttagc---ttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctat 37635281  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37638291 - 37638194
Alignment:
Q  304 gggttgtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctat 403  Q
    |||| ||||||||||||||||   ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  37638291 gggtcgtggagcggtgttagc---ttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctat 37638195  T

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Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37646579 - 37646482
Alignment:
Q  304 gggttgtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctat 403  Q
    |||| ||||||||||||||||   ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  37646579 gggtcgtggagcggtgttagc---ttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctat 37646483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37649492 - 37649395
Alignment:
Q  304 gggttgtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctat 403  Q
    |||| ||||||||||||||||   ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  37649492 gggtcgtggagcggtgttagc---ttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctat 37649396  T

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Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 37643661 - 37643569
Alignment:
Q  309 gtggagcggtgttagcagctttgatgctatgcctcttaggcgtcaccatttatggtgaagatccttacatttactatacatggaaggttacctatg 404  Q
    ||||||||||||||||   ||| ||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  37643661 gtggagcggtgttagc---ttttatgctatgccttttaggtgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37643569  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 5884299 - 5884252
Alignment:
Q  357 tttatggtgaagatccttacatttactatacatggaaggttacctatg 404  Q
    ||||||||||||| |||||||||||||  |||||||| ||||||||||    
T  5884299 tttatggtgaagacccttacatttacttcacatggaatgttacctatg 5884252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 32388657 - 32388617
Alignment:
Q  364 tgaagatccttacatttactatacatggaaggttacctatg 404  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  32388657 tgaagatccttatgtgtactatacatggaaggttacctatg 32388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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