View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_12 (Length: 399)
Name: NF0541_low_12
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 32482949 - 32483328
Alignment:
| Q |
14 |
atattcaagaaaattgaatttcaatcaaaagaaattcatggaaataagtgatccagtgaaagcataaaggtgttnnnnnnnttgaaacttgaacattcca |
113 |
Q |
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| T |
32482949 |
atattcaagaaaattgaatttcaatcaaaagaaattcatggaaataagtgatccagtgaaagcataaaggtgttaaaaaaattgaaacttgaacattcca |
32483048 |
T |
|
| Q |
114 |
aggttataacataattagattatcataagaaagaatcaaacaaaacaaagcattgcaaaatcaaaatggtgaactgtttctctagatcaaacattcaaat |
213 |
Q |
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| T |
32483049 |
aggttataacataattagattatcataagaaagaatcaaacaaaacaaagcattgcaaaatcaaaatggtgcactgtttctctagatcaaacattcaaat |
32483148 |
T |
|
| Q |
214 |
atgaaaaaatatgttatttttatggtgcacatattaagtgttgtatcatacataagtttgtctccatcattggatcgactgaaatatgatgggacttatt |
313 |
Q |
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| T |
32483149 |
atgaaaaaatatgttatttttatggtgcacatattaagtgttgcatcatacataagtttgtctctatcattggatcgactaaaatatgatggaacttatt |
32483248 |
T |
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| Q |
314 |
gatctaatgatnnnnnnngttttgaatagacacaacactannnnnnnngtgcatgaattctaacattaacaagtcaaagt |
393 |
Q |
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| T |
32483249 |
aatctaatgataaaaaaagttttgaatagacacaacactattttttttgtgcatgaattctaacattaacaaatcaaagt |
32483328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 46969027 - 46968974
Alignment:
| Q |
189 |
gtttctctagatcaaacattcaaatatgaaaaaatatgttatttttatggtgca |
242 |
Q |
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|||||| | ||||||||||||||||||||||||||| | || || ||||||||| |
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| T |
46969027 |
gtttcttttgatcaaacattcaaatatgaaaaaataagctagttatatggtgca |
46968974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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