View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_18 (Length: 341)
Name: NF0541_low_18
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 333
Target Start/End: Complemental strand, 420692 - 420392
Alignment:
| Q |
30 |
ctccattccttcttagtcttataactatgatcacgaaaattaacgttttttcaagttctgctatgttatttgttaaccctgtcgaaaacctcaattatca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
420692 |
ctccattccttcttagtcttataactatgatcacgaaaattaacgttttttcaagttctgctatgttatttgttaacactgtcgaaaacctcaattatca |
420593 |
T |
|
| Q |
130 |
agagtacataacaaaattttccacaataacatgattagagaaattgagtttaaaacatactcaactaagcactctattggagtaattaaaaagtttgaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420592 |
agagtacataacaaaattttccacaataacatgattagagaaattgagtttaaaacatactcaactaagcactctattggagtaattaaaaagtttgaac |
420493 |
T |
|
| Q |
230 |
tttttagcaccccatgattgnnnnnnnnnncttcctattgggtctaaagtaatatgttttaggcaatgcatgttttctcattggttaactgtggatccta |
329 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
420492 |
tttttagcaccccatgattgtttttttt---ttcctattgggtctaaagtaatatgttttaggcaatacatgttttctcattggttaactgtggatccta |
420396 |
T |
|
| Q |
330 |
tgat |
333 |
Q |
| |
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|||| |
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|
| T |
420395 |
tgat |
420392 |
T |
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