View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_21 (Length: 322)
Name: NF0541_low_21
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_21 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 5111724 - 5112005
Alignment:
| Q |
30 |
aacctttcatttatatcatgaaggacggagggaccgctaattaagccttctttagacccttgtataaatgaatgtgcatatattgcatggcaactaatat |
129 |
Q |
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| T |
5111724 |
aacctttcatttatatcatgaaggaccgagagaccgctaattaagccttctttagacccttgtataaatgaatgtgcat----tgcatggtaacta---t |
5111816 |
T |
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| Q |
130 |
aatatatgaatcattctaagtaattctaattaatgaatgtatttcctctatctatctatctatatgtgttgaactaaaggagaaattccaaaaggaattg |
229 |
Q |
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| T |
5111817 |
aatatatgaatcattctaagtaattctaattaatgaatgtatttcctcta----tctatctatatgtgttgaactaaaggagaaattccaaaaggaattg |
5111912 |
T |
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| Q |
230 |
gtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatattaatgttcaacaacacatcattgcaatacttat |
322 |
Q |
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| T |
5111913 |
gtgatcttacagaactgaacacggtcaaccttgaagataatttgctcacaggcaacatattaatgttcaacaacacatcattgcaatacttat |
5112005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 5095118 - 5095247
Alignment:
| Q |
193 |
atgtgttgaactaaaggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatattaa |
292 |
Q |
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| T |
5095118 |
atgtattgaactaaaggagaaattcccaaagaaattggtgatctttcacaattgaaaatggtcaaccttcaagataatttcctcgtaggcaacatattaa |
5095217 |
T |
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| Q |
293 |
tgttcaacaacacatcattgcaatacttat |
322 |
Q |
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| T |
5095218 |
tgttcaacaacacatcattgcaatacttat |
5095247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 5083229 - 5083134
Alignment:
| Q |
196 |
tgttgaactaaaggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatatta |
291 |
Q |
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| T |
5083229 |
tgttgaactaaaggtgaaattcctaaaggaattggtgatcttacacaactgagaacggtaaaccttcaacgcaattttctctcaggcaacatatta |
5083134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 14427599 - 14427485
Alignment:
| Q |
208 |
ggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatattaatgttcaacaacacat |
307 |
Q |
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| T |
14427599 |
ggagaaattccgaaaggaattggtgatcttacacaactgagatttgtgaacctgcaatataatatgctcacaggtaacatattgatgttcaacaactcat |
14427500 |
T |
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| Q |
308 |
cattgcaatacttat |
322 |
Q |
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| T |
14427499 |
cgttgcaatacttat |
14427485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 16874554 - 16874600
Alignment:
| Q |
196 |
tgttgaactaaaggagaaattccaaaaggaattggtgatcatacaca |
242 |
Q |
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| T |
16874554 |
tgttgaacaaaaggtgaaattccaaaaggaattggtgatcttacaca |
16874600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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