View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_26 (Length: 266)
Name: NF0541_low_26
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 5332335 - 5332529
Alignment:
| Q |
49 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
148 |
Q |
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| T |
5332335 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5332434 |
T |
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| Q |
149 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccgga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5332435 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga |
5332529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 5350054 - 5350248
Alignment:
| Q |
49 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5350054 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5350153 |
T |
|
| Q |
149 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccgga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5350154 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga |
5350248 |
T |
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