View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_27 (Length: 266)
Name: NF0541_low_27
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 33362564 - 33362442
Alignment:
| Q |
144 |
atacacagtcacacacatctgcaaccatacaaataatacaggtacttttttctgattcataatttgtccattatgtttcaagcaatttatatgagtattt |
243 |
Q |
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| T |
33362564 |
atacacagtcacacacatctgcaaccatacaaataatacaggtacctttttctgattcataatttgtccattatgtttcaagcaatttatatgactattt |
33362465 |
T |
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| Q |
244 |
tgatgttgtgtataagtgtgagt |
266 |
Q |
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| T |
33362464 |
tgaagttgtgtataagtgtgagt |
33362442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 33362717 - 33362587
Alignment:
| Q |
30 |
attatagcctacagcaacaaattactcaacatatctacaagtttaaatatgtgagccagctaatttgatattcta--nnnnnnnnccaaattatcaaact |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33362717 |
attatagcctacagcaacaaattactcaacatatctacaag-ttaaatatgtgagccagctaatttgatattctattttttttttccaaattatcaaact |
33362619 |
T |
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| Q |
128 |
tatatctgcacattacatacacagtcacacac |
159 |
Q |
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| T |
33362618 |
tatatctgcacattacatacacagtcacacac |
33362587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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