View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_28 (Length: 263)
Name: NF0541_low_28
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 48636837 - 48636653
Alignment:
| Q |
5 |
cacttctcatcactgtgtgtgtgagtttcatcgctagactcattacagccnnnnnnnnnnnnnctatcaagcttgaacactaaagttcgacaaaacataa |
104 |
Q |
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| T |
48636837 |
cacttctcatcactgtgtgtgtgagtttcatcgctagactcattacagccaaaaaaaaaa---ctatcaagcttgaacactaaagttcgacaaaacataa |
48636741 |
T |
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| Q |
105 |
aattaatgcacaatttaacagcatagttatcattatcaataataataaactataaagagtgtgtatcgaaaatcttacatcttctcca |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48636740 |
aattaatgcacaatttaacagcatagttatcattatcaataataataaattataaagagtgtgtatcgaaaatcttacatcttctcca |
48636653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 6270634 - 6270566
Alignment:
| Q |
188 |
ctccaaaaagccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctctgctc |
256 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6270634 |
ctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctcggctc |
6270566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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