View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_32 (Length: 253)
Name: NF0541_low_32
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 44688999 - 44689101
Alignment:
| Q |
13 |
cagactttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatccttaaaatgctgcagcattcataaaaagattat |
112 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688999 |
cagagtttcccctttgtccgattatcctgatcactccaacttgttctggccacctcctgactggatccttaaaatgctgcagcattcataaaaagattat |
44689098 |
T |
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| Q |
113 |
ctt |
115 |
Q |
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||| |
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| T |
44689099 |
ctt |
44689101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 44689156 - 44689278
Alignment:
| Q |
131 |
cagttgccaaaagtgttctctttcctagaagacttggtannnnnnncttttcaattccttcaattgctcttgtttctcacccctcatatgtgtaannnnn |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689156 |
cagttgccaaaagtgttctctttcctagaagacttggtatttttttcttttcaattccttcaattgctcttgtttctcacccctcatatgtgtaattttt |
44689255 |
T |
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| Q |
231 |
nncaatgaatcttctatcacttt |
253 |
Q |
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||||||||||||||||||||| |
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| T |
44689256 |
ttcaatgaatcttctatcacttt |
44689278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 7025634 - 7025579
Alignment:
| Q |
25 |
tttgtccgattatcctgattactccaacttgttctggccacctcctgactggatcc |
80 |
Q |
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| T |
7025634 |
tttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatcc |
7025579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 7041388 - 7041351
Alignment:
| Q |
32 |
gattatcctgattactccaacttgttctggccacctcc |
69 |
Q |
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||||||||||| || ||||||||||||||||||||||| |
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| T |
7041388 |
gattatcctgaatattccaacttgttctggccacctcc |
7041351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 41980751 - 41980690
Alignment:
| Q |
18 |
tttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
79 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| |||||||||| || |||||| |
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| T |
41980751 |
tttcccctttgtccgattatcctgaatactacaacttgttagggccacctccggaatggatc |
41980690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 41985525 - 41985464
Alignment:
| Q |
18 |
tttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
79 |
Q |
| |
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||||||||||||| ||||||||||| ||||||| || ||| ||||||||||| || |||||| |
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| T |
41985525 |
tttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatc |
41985464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 9432776 - 9432720
Alignment:
| Q |
23 |
cctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
79 |
Q |
| |
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|||||||| ||||||||||| || | ||||||||||||||||||||| || |||||| |
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| T |
9432776 |
cctttgtctgattatcctgaatattacaacttgttctggccacctccggagtggatc |
9432720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 9617700 - 9617745
Alignment:
| Q |
34 |
ttatcctgattactccaacttgttctggccacctcctgactggatc |
79 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||| || |||||| |
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| T |
9617700 |
ttatcctgaatacttcaacttgttctggccacctccggattggatc |
9617745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 20694498 - 20694560
Alignment:
| Q |
17 |
ctttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
79 |
Q |
| |
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||||| |||||||||||||||||||| || | |||||||||||||| |||||||| |||||| |
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| T |
20694498 |
ctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatc |
20694560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 18991102 - 18991041
Alignment:
| Q |
17 |
ctttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggat |
78 |
Q |
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||||| |||||||| |||||||||| |||| ||||||||||||||||||||| || ||||| |
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| T |
18991102 |
ctttctcctttgtctcattatcctgactacttcaacttgttctggccacctccggagtggat |
18991041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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