View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0541_low_33 (Length: 251)

Name: NF0541_low_33
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0541_low_33
NF0541_low_33
[»] chr2 (2 HSPs)
chr2 (72-243)||(26497142-26497313)
chr2 (1-77)||(26496930-26497006)
[»] chr1 (2 HSPs)
chr1 (72-121)||(24640657-24640706)
chr1 (72-112)||(26080358-26080398)
[»] chr5 (3 HSPs)
chr5 (72-121)||(23611668-23611717)
chr5 (72-121)||(23843064-23843113)
chr5 (9-45)||(3575573-3575609)
[»] chr4 (3 HSPs)
chr4 (75-118)||(12277317-12277360)
chr4 (72-121)||(17558113-17558162)
chr4 (72-121)||(52475793-52475842)
[»] chr8 (1 HSPs)
chr8 (1-43)||(9003406-9003448)
[»] scaffold0181 (1 HSPs)
scaffold0181 (72-121)||(3913-3962)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 26497142 - 26497313
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa 171  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26497142 ttcaggaagatggatgggtagtttgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa 26497241  T
Q  172 ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacagctagg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26497242 ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacaactagg 26497313  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26496930 - 26497006
Alignment:
Q  1 tgctcctcatggtcacaaaactgattggatcatgcatgagtatcgtcttgatgatgatgataatgcagaagttcagg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496930 tgctcctcatggtcacaaaactgattggatcatgcatgagtatcgtcttgatgatgatgataatgcagaagttcagg 26497006  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 24640706 - 24640657
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  24640706 ttcagaaagatggatgggtagtacgcagggtattcaaaaagataaacaca 24640657  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 26080358 - 26080398
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaag 112  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  26080358 ttcagaaagatggatgggtagtacgcatggtattcaaaaag 26080398  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 23611717 - 23611668
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| ||| |||||||||||||| |||||||    
T  23611717 ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca 23611668  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 23843113 - 23843064
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| ||| |||||||||||||| |||||||    
T  23843113 ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca 23843064  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 3575573 - 3575609
Alignment:
Q  9 atggtcacaaaactgattggatcatgcatgagtatcg 45  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  3575573 atggtcaaaaatctgattggatcatgcatgagtatcg 3575609  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 12277317 - 12277360
Alignment:
Q  75 aggaagatggatgggtagtatgcagggtattcaaaaagaaaaac 118  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||    
T  12277317 aggaagatggatgggtggtatgcagggtgttcaagaagaaaaac 12277360  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 17558113 - 17558162
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  17558113 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 17558162  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 52475793 - 52475842
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  52475793 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 52475842  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9003406 - 9003448
Alignment:
Q  1 tgctcctcatggtcacaaaactgattggatcatgcatgagtat 43  Q
    |||||||||||| || ||| |||||||||||||||||||||||    
T  9003406 tgctcctcatggccaaaaatctgattggatcatgcatgagtat 9003448  T

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Target: scaffold0181 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 3962 - 3913
Alignment:
Q  72 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 121  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  3962 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 3913  T

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