View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_42 (Length: 230)
Name: NF0541_low_42
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 5332330 - 5332529
Alignment:
| Q |
8 |
ccaacaatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnn |
107 |
Q |
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| T |
5332330 |
ccaacaatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaat |
5332429 |
T |
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| Q |
108 |
nnnnnnnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccgga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5332430 |
atttttttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga |
5332529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 5350049 - 5350248
Alignment:
| Q |
8 |
ccaacaatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnn |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5350049 |
ccaacaatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaat |
5350148 |
T |
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| Q |
108 |
nnnnnnnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccgga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5350149 |
atttttttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga |
5350248 |
T |
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