View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_45 (Length: 227)
Name: NF0541_low_45
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 31196542 - 31196693
Alignment:
| Q |
51 |
aaagaagccgtattgaaagttgaaacctataagtcaaacaacttaggcagttgggcgtgactatggatcccaagcttttttgagctacaattacagggag |
150 |
Q |
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| T |
31196542 |
aaagaagccgcattgaaagttgaaacctataagtcaaacaacttaggcagttgggcgtgactatggatcccaagcttttttgagctataattatagggag |
31196641 |
T |
|
| Q |
151 |
ctac----aagtgtcaaacatcaaaggacttcgaaaacttacacatccaaat |
198 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31196642 |
ctacaagtaagtgtcaaacatcaaaggacttcgaaaacttacacattcaaat |
31196693 |
T |
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