View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_5 (Length: 462)
Name: NF0541_low_5
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 64 - 448
Target Start/End: Complemental strand, 13631531 - 13631135
Alignment:
| Q |
64 |
gagtcaattatttttcaatcagtcatatat--gtttatgcttgcatactttatctcccaaattatttatgtactttataaagtacaaataaaggagaaat |
161 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631531 |
gagtcaattatttttcaatcagtcatatatatgtttatgcttgcatactttatctcccaaattatttatgtactttataaagtacaaataaaggagaaat |
13631432 |
T |
|
| Q |
162 |
ccacacacataactagtttaattttctcctactaa----agttatttgtgtactttattttttgcaatggaattaaagagagtaaaatcataccaatgac |
257 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631431 |
ccacacacataactagtttaattttctcctactaattaaagttatttgtgtactttattttttgcaatggaattaaagagagtaaaatcataccaatgac |
13631332 |
T |
|
| Q |
258 |
atataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcaccaaatgatctatatgtcaaatac |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631331 |
atataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcaccaaatgatctatatgtcaaatac |
13631232 |
T |
|
| Q |
358 |
ttcactgctggttttagcattggagagccctatata------tataaagtagagaatgatccactataattgaagtaacaaattttacgtacatatt |
448 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13631231 |
ttcactgctggttttagcattggagagccctatatatatatatataaagtagaaaatgatccactataattaaagtaacaaattttacgtacatatt |
13631135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 64 - 448
Target Start/End: Complemental strand, 13731943 - 13731547
Alignment:
| Q |
64 |
gagtcaattatttttcaatcagtcatatat--gtttatgcttgcatactttatctcccaaattatttatgtactttataaagtacaaataaaggagaaat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731943 |
gagtcaattatttttcaatcagtcatatatatgtttatgcttgcatactttatctcccaaattatttatgtactttataaagtacaaataaaggagaaat |
13731844 |
T |
|
| Q |
162 |
ccacacacataactagtttaattttctcctactaa----agttatttgtgtactttattttttgcaatggaattaaagagagtaaaatcataccaatgac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731843 |
ccacacacataactagtttaattttctcctactaattaaagttatttgtgtactttattttttgcaatggaattaaagagagtaaaatcataccaatgac |
13731744 |
T |
|
| Q |
258 |
atataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcaccaaatgatctatatgtcaaatac |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731743 |
atataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcaccaaatgatctatatgtcaaatac |
13731644 |
T |
|
| Q |
358 |
ttcactgctggttttagcattggagagccctatata------tataaagtagagaatgatccactataattgaagtaacaaattttacgtacatatt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13731643 |
ttcactgctggttttagcattggagagccctatatatatatatataaagtagaaaatgatccactataattaaagtaacaaattttacgtacatatt |
13731547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 13750195 - 13750065
Alignment:
| Q |
253 |
atgacatataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcaccaaatgatctatatgtca |
352 |
Q |
| |
|
||||||||||||||||||||| || || || |||| ||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||| || | | |
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| T |
13750195 |
atgacatataaaggagttgttacatctttgaaccctctaaagattccttgcattgccaatgagagaagaacggcaggagaaccaaatgctctcaatctta |
13750096 |
T |
|
| Q |
353 |
aatacttcactgctggttttagcattggaga |
383 |
Q |
| |
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| || |||||||||||||||||||| ||||| |
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|
| T |
13750095 |
agtatttcactgctggttttagcataggaga |
13750065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 41821098 - 41821187
Alignment:
| Q |
246 |
cataccaatgacatataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcacc |
335 |
Q |
| |
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||||||| || |||||||||||||| | ||||| |||||||||||||| | ||| ||||| |||||||| |||||||||||||||||||| |
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| T |
41821098 |
cataccagtggcatataaaggagttttagtgtctttaaatcctcgaaaaactccctgcatcgccaatgaaagaagaaccgcaggagcacc |
41821187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 9277498 - 9277411
Alignment:
| Q |
248 |
taccaatgacatataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaagaaccgcaggagcacc |
335 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || || |||| ||| ||||||||||| ||||| |||||||| || ||||||||||| |
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| T |
9277498 |
taccgatgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggccaaggagagaagcactgcaggagcacc |
9277411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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