View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0541_low_6 (Length: 439)
Name: NF0541_low_6
Description: NF0541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0541_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 202 - 410
Target Start/End: Complemental strand, 5935043 - 5934839
Alignment:
| Q |
202 |
ctctaggagtgagttttannnnnnnggaggggtactctacgagtgagttatggaatccaatcatttaataagatatttgactaaagtttgctaagaaaag |
301 |
Q |
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| T |
5935043 |
ctctaggagtgagttttatttttttggaggggtactctacgagtgagtcatggaattcaatcatttaacaagatatttgactaaagtttgctaagaaaag |
5934944 |
T |
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| Q |
302 |
atattacttgactaaatttaaaggtggccggttttagatgactacaatgtaagtaacatgcatgggtaaaagaatttcgacctttttcgagggaacgaga |
401 |
Q |
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| T |
5934943 |
atagtacttgactaaatttaaaggtggccggttttaaatgactacaatgtaagtaa----catgggtaaaagaatttcgacctttttcgagagaatgaga |
5934848 |
T |
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| Q |
402 |
cgagagtga |
410 |
Q |
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||||||||| |
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| T |
5934847 |
cgagagtga |
5934839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 5935190 - 5935039
Alignment:
| Q |
13 |
aatatatcaggaccatttgatttgaatcaatgactaagattataaaactaatgtgtaacctggattgtccgatctcatatcaatgatcgtgattgaataa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
5935190 |
aatatatcaggaccatttgatttgaatcaatgactaagattataaaattaatgtgtaatttggattatccgatctcatatcaatgatcgtgattgaataa |
5935091 |
T |
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| Q |
113 |
tgtataaaaccgtgtgtttttctatagcaacaaaaccacatccgtaactcta |
164 |
Q |
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| T |
5935090 |
tgtataaaaccgtatgtttttttatagcaacaaaaccacatccgtaactcta |
5935039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 5937251 - 5937294
Alignment:
| Q |
243 |
agtgagttatggaatccaatcatttaataagatatttgactaaa |
286 |
Q |
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| T |
5937251 |
agtgagttatggaatccaatcatttaacaagatatctgactaaa |
5937294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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